Chitinophaga pinensis: Cpin_2107
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Entry
Cpin_2107 CDS
T00959
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cpi
Chitinophaga pinensis
Pathway
cpi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Cpin_2107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpi03021
]
Cpin_2107
Transcription machinery [BR:
cpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cpin_2107
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_ECF
Sigma70_r4
HTH_23
GerE
HTH_11
HTH_7
TnsD
HTH_38
TFIIE_alpha
RPA_C
WHD_HrcA
Motif
Other DBs
NCBI-ProteinID:
ACU59600
UniProt:
A0A979GV13
LinkDB
All DBs
Position
2581028..2581636
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AA seq
202 aa
AA seq
DB search
MPDKPSNIEQGVLQQIAEGDEASFRELYARYYPQLRPFIWKYTGSALQTEDILQETFIRI
WLNRDKLPEIENLSAWIFKVASREYLTLLRKQLVYEEKLATLNINMDKDGDLAPLTPDDQ
AHLADIRRVIGEAVARLPEQRRRIYRMSRDEGIRIQEIADTLSITPRTVKNVLTTSLKEI
REHLAASGYTFMIPLFLFLKDY
NT seq
609 nt
NT seq
+upstream
nt +downstream
nt
ttgccggataaaccatcaaatatagaacagggggtgctgcaacagatcgcagaaggcgat
gaggcttcattcagggagctgtatgcccgttattatcctcaactgcgtccttttatctgg
aaatataccggctcggcgttacagacagaagatatcttacaggaaacgtttatcaggatc
tggctgaacagggacaaattgccggagattgaaaatctcagtgcctggatctttaaagtc
gcctcccgggaatacctcaccctactcaggaagcagctggtatatgaagaaaagctggct
acgctgaatattaatatggataaggatggagatctggccccgcttacgccggatgaccag
gcgcacctggcggatatcaggcgggtgatcggcgaagcggtagcacggctgccagaacaa
cgccgccgtatttaccgtatgagccgggatgagggtatccggatacaggagatcgccgat
acactgtctattactccacgtaccgtaaagaacgtattaactaccagtctgaaggagatc
cgggaacacctggcggcttcaggatatacttttatgatccctctctttttgttcctcaaa
gattattaa
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