Chitinophaga pinensis: Cpin_2291
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Entry
Cpin_2291 CDS
T00959
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpi
Chitinophaga pinensis
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpi03016
]
Cpin_2291
Enzymes [BR:
cpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cpin_2291
Transfer RNA biogenesis [BR:
cpi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cpin_2291
Prokaryotic type
tRNA splicing ligases
Cpin_2291
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACU59782
UniProt:
A0A979GNP8
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All DBs
Position
2823648..2825075
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AA seq
475 aa
AA seq
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MHMNRINGNDLLAIGFTQGKILGLALEVLEKHYQDADRDMVLSMMKALAEKPELYLDHEI
LEDLATKMIEEASAPKDETIDLNVTAKEFAVYGQEHIDEGAVRQMNIAMRLPVTVAGALM
PDAHQGYGLPIGGVLAAKNAVIPYGVGVDIGCRMALSIFDIPENHYFENHDFYKKELIAH
TRFGAGHGFMRKERAEHAVLDRNEFNMTQFIKNLHDKAWSQLGSSGGGNHFVEWGIIEFS
EEDKLLNIAAGRYLALLSHSGSRGLGATLAGHYTRLAKDICKLPKDAANLAYLDMNSEAG
QEYWLAMNLAGDYASACHEVIHDKMAKAIGGQLLAKVENHHNFAWKEIWNGEEVIVHRKG
ATPAGKGVMGIIPGSMAAPGFLVRGKGEDLAINSASHGAGRQMSRTQATKNISHQEMKAI
LQENKVTLIGAGLDEAPMAYKDINVVMNAQKDLVDVVAKFTPKIVRMADDGSKED
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcatatgaacaggattaatggtaacgatctgttagctatcggttttactcagggaaaa
atattgggccttgcgctggaagtactggaaaagcattaccaggacgctgaccgtgatatg
gttttatctatgatgaaagccttggcagaaaaaccggagttatacctggatcatgagata
ctggaagacctggcgactaagatgattgaagaagccagcgcgccaaaagacgaaacaatt
gacctgaatgtaacggcaaaggaatttgcggtatatggtcaggaacatatagacgaagga
gctgtcagacaaatgaatattgccatgcgtctgcctgttacggtagcaggtgctttgatg
ccggatgcgcatcaggggtacggattgccgataggtggtgtactggctgcaaaaaatgcc
gtaataccttatggtgttggtgtggatatcggttgccgtatggccctgtccatcttcgat
attccggagaaccattatttcgaaaatcacgatttttataaaaaagaactgattgcgcat
acccgtttcggtgcaggacatggctttatgagaaaggaacgtgcagaacatgccgtactg
gatcgtaacgagtttaacatgacacagtttattaaaaacctgcatgataaagcatggtct
cagctaggatcatccggaggtggtaaccacttcgtagaatggggtatcattgaattctcc
gaagaggataaactgttgaacattgccgcaggtagatacctggcattgttgtcacattcc
gggtcaagaggactgggtgcaacactggctggtcattatacccgactggcgaaagatatt
tgtaaactgccaaaagacgcagcaaatcttgcttacctggatatgaacagcgaagctggt
caggagtactggctggcaatgaacctggcaggtgactatgcttctgcatgtcatgaagtg
atccatgataaaatggcgaaggctatcggtggacaacttctggcgaaagtggaaaaccac
cataactttgcctggaaagagatctggaatggggaagaagtgattgtacatcgtaaagga
gctacgccggccggtaaaggtgtaatggggatcattccgggttctatggccgcaccggga
ttcctggtgagaggtaaaggtgaagacctcgctattaattctgcttctcatggcgcagga
cgtcagatgagccgtacacaggctacgaaaaatatcagccaccaggagatgaaagcgatc
ctgcaggaaaataaggtaacattgattggtgcaggtctggatgaagcacctatggcgtat
aaagacatcaatgtggtgatgaatgcgcaaaaagacctggtagatgtggtggcgaaattc
acaccaaaaatagtgagaatggctgatgacgggagtaaagaagattaa
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