Chitinophaga pinensis: Cpin_3012
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Entry
Cpin_3012 CDS
T00959
Name
(GenBank) conserved hypothetical protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03420
Nucleotide excision repair
cpi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cpin_3012
03430 Mismatch repair
Cpin_3012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpi03400
]
Cpin_3012
Enzymes [BR:
cpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cpin_3012
DNA repair and recombination proteins [BR:
cpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cpin_3012
MMR (mismatch excision repair)
Other MMR factors
Cpin_3012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
Viral_helicase1
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ACU60488
UniProt:
A0A979G4E9
LinkDB
All DBs
Position
complement(3727123..3728151)
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AA seq
342 aa
AA seq
DB search
MDKRVIFAVAGSGKTTYIINKLDLQKRALILTYTNNNYNNLKIGISKKFGYIPANIKVMT
YYDFLYNFCFKPLLSHQVKAAGINWSPNTSRYHKATDRGYFIDSFDRLYSNRITKYFKET
GIETEINERVVQYFDMLFIDEVQDFGGHDFNFLKNIAQANMDICLVGDFNQHTYDTSKDG
NVNGTLHDDYNRYQAHFRSMGLSIDTTTLVKSYRCNPEICKFITIKLGIHIESNRTDKSQ
WYTVSMEDEAERLFNNNAIVKLFYDEHSAYKCYSNNWGASKGEDHYNDVCIIMNRKSWKH
LEDDNLNTLPSATKNKLYVAISRTKGDLYFAPDSMFKAYKNK
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggataagagagtaatttttgcagttgcaggatctggcaaaacaacatatataatcaac
aagctagacctacaaaagagagcacttatactaacgtatacaaataacaattacaataat
ctaaaaatcggcatttctaaaaagttcggttatatacctgcgaacatcaaggtaatgacg
tattacgactttttatataatttctgtttcaagcctctattatctcatcaagtaaaagcc
gctggcattaattggtcacctaacacctctagataccataaggctactgataggggatat
tttatcgatagttttgatcgtctttatagtaatagaataacaaaatattttaaagaaacc
ggaattgaaactgaaatcaacgaaagagtggttcaatattttgacatgctttttattgat
gaagttcaagattttggcggacatgacttcaactttttaaaaaacattgcgcaggcaaat
atggacatttgcctagttggggatttcaaccagcacacatatgatacaagtaaagatgga
aatgtaaacggtactctgcatgatgactataataggtatcaggcacattttagatctatg
ggcttatccattgacaccacgactttagtaaaaagctatcgctgcaatccggaaatttgc
aaattcattacgattaaactcggtatccacattgaatctaatcgcaccgataaatcgcag
tggtatacggtatcaatggaggatgaagccgaacgactattcaacaataatgcaatagtt
aaacttttctatgacgaacattcagcatataaatgttatagcaataattggggcgcctca
aaaggcgaagatcattataatgacgtctgtataattatgaacagaaaaagctggaagcat
ttggaagatgacaacctcaacacacttccttcagcaaccaaaaataaattatacgtagct
atctcacgtacaaaaggtgatttatactttgcaccggactcgatgtttaaagcgtataaa
aacaagtaa
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