Chitinophaga pinensis: Cpin_3093
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Entry
Cpin_3093 CDS
T00959
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpin_3093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpi03019
]
Cpin_3093
03009 Ribosome biogenesis [BR:
cpi03009
]
Cpin_3093
Enzymes [BR:
cpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cpin_3093
Messenger RNA biogenesis [BR:
cpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cpin_3093
Ribosome biogenesis [BR:
cpi03009
]
Prokaryotic type
rRNA helicases
Cpin_3093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
HCMV_UL15A
CMS1
Motif
Other DBs
NCBI-ProteinID:
ACU60562
UniProt:
A0A979GPH9
LinkDB
All DBs
Position
3809276..3811021
Genome browser
AA seq
581 aa
AA seq
DB search
MTTFETLGLQEPILKGIQDLGFIAPTPIQEKAIPVLLGGDRDFVGLAQTGTGKTAAFGLP
LLQQIDIKQRHPQGLILCPTRELCLQITNDLKNFSKHLGDVSIVAVYGGSSIVQQLRDLK
RGVHIVVATPGRLLDIIERKAVNFANVRYVVLDEADEMLNMGFQEDINNILSNTPEEKTT
WLFSATMPQEVRRIAQKYMSDPFELTVGNKNSGNANIEHEYYVVRPREKYAALKRIVDYN
PEIFGIIFTRTKIESQEIAESLIRDGYNADALHGDLTQQQRDKVMKRFREKSLQVLVATD
VAARGIDVDNVTHVINYELPDDVENYTHRSGRTARAGKSGISIAIITGRDTGKIRQIERV
IGKKFTKVDVPDGFAVCEKQLFGLVHKVHNVVVNEEQIEPYLERIFEEFASMTKEEIIKR
FASLEFNQFLEYYQDAPDLNVKEERRSAEGGERRSSNGKFTRLFINLGSVDDFTRGDMLR
YLCDTSGVRGNKIGRIDLKGVYSFFEVENDVVEKFQQTFKKAEYNGRSVRIEMSQDGDKR
RSGGGGRPPREGGSGGRRWEGSNSGGAGAGGSRAGGFRKRY
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgactacatttgaaactttaggcttacaggagcccatcttaaaaggaatccaggacctg
ggatttattgcacctacgccaattcaggaaaaagctattcctgtgttattgggtggtgac
cgggactttgtaggtttggcccagacgggtacaggaaagacggcagcatttggcctgccg
ctgttacagcagatcgatattaaacaacgtcatccacagggattgattttgtgtccaaca
cgtgaattatgtttgcagatcaccaatgacctgaaaaacttcagtaaacacctgggtgat
gtaagcatcgtagcggtgtatggtggttcaagcatcgtgcagcagctgcgcgatctgaaa
agaggagtgcacatcgtagtggcaactcccggccgtttgctcgatatcatcgaaagaaag
gcagtaaattttgcgaatgtacgttatgttgtactggatgaagcagatgaaatgctgaat
atgggcttccaggaagacatcaataatatattatccaatacgcctgaagagaaaaccacc
tggttgttctcagctaccatgcctcaggaagtacgccgcattgcgcagaagtacatgtca
gatcctttcgaactgaccgtaggtaataaaaacagcggtaacgctaacatcgaacacgaa
tactacgtagtacgtccgcgtgaaaaatacgcagcactgaaacgtatcgtggattacaac
cctgagatttttggtatcatttttacccgtactaaaatagaatcacaggaaatcgcggaa
tcacttatccgtgacggttataatgcagatgccctgcatggtgacctgacgcagcagcag
cgtgataaggtaatgaaacgcttccgtgaaaaatcattacaggtactggtagcaacggac
gttgcagcccgtggtatcgacgttgacaacgtaacacacgtaatcaactacgaactgcct
gatgatgtagaaaactacacacaccgtagtggtcgtaccgcacgtgccggtaagtctggt
atttccatcgcgatcattactggtcgtgataccggaaagatccgtcagatcgaaagagtg
atcggtaagaaattcactaaagtagacgtgcctgatggtttcgcagtatgtgaaaaacaa
ctgttcggcctcgttcataaagtgcacaacgtagttgtaaacgaagagcagatcgaacca
tacctggaacgcatatttgaagagtttgcgtccatgaccaaagaagagatcatcaaacgc
tttgcttctcttgaattcaatcagttcctggaatattatcaggatgcacctgatctgaat
gtgaaagaagaaagaagatctgctgaaggtggagaacgcagaagtagcaacggtaaattt
acccgtctgtttatcaaccttggttcggtagatgacttcacccgtggtgatatgttacgt
tacctgtgcgacaccagtggtgtacgtggtaacaaaataggtcgtatcgatctgaaaggt
gtttattccttcttcgaagtagagaatgatgttgtggagaaattccagcagaccttcaag
aaagcagaatacaatggtcgtagcgtacgtatcgaaatgtctcaggatggcgataaacgt
cgttcgggtggcggtggccgtcctccacgtgaaggtggtagcggtggcagacgctgggaa
ggtagcaacagcggtggcgcaggcgccggtggcagccgtgctggtggtttcagaaagaga
tactag
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