Chitinophaga pinensis: Cpin_3452
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Entry
Cpin_3452 CDS
T00959
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cpi
Chitinophaga pinensis
Pathway
cpi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Cpin_3452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpi03021
]
Cpin_3452
Transcription machinery [BR:
cpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cpin_3452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
GerE
HTH_40
HTH_11
HTH_38
HTH_Tnp_ISL3
HTH_23
HTH_24
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
ACU60919
UniProt:
A0A979GUR5
LinkDB
All DBs
Position
complement(4309342..4309938)
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AA seq
198 aa
AA seq
DB search
MDVVQDTDKLLLAALKKGDELAFSVLYDRYWAELYTMCYRRIGDEDAAKDIVQNIFVNLW
TSRKEILIENTLAPYLNRAVRNRTISFYKKNMASMSRDAQFQHEQVQYAPDSSLDAKELE
AVINDEIASMSDTMRKAFVLSRHENKSIREIATELSLSEQTIKNNISQALDRLRKKTQSF
YAEPANILGVLIILLTKP
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggatgttgttcaggatacagacaaactattgctcgcggccttgaaaaaaggcgatgaa
ctcgccttcagtgtcttatacgaccgttactgggcggaattatatacgatgtgctaccgc
aggatcggtgatgaagatgctgcaaaagacattgtacagaatatatttgtcaatctctgg
acctcccgtaaagagatcctcatagaaaataccctggccccttatctcaacagggccgtg
cgcaacaggaccatcagcttttataaaaagaacatggccagcatgagccgggatgcacag
tttcaacacgaacaggtacaatacgcgcctgattccagcctggatgccaaagaactggaa
gccgtcattaatgatgaaatagccagcatgtcagataccatgcggaaagcttttgtatta
agccgtcatgaaaataaatccatccgtgaaatagcgacagagctctccctttctgaacag
acaattaaaaataatatctctcaggcactcgaccggctgagaaaaaagacacaatccttc
tacgcagaacctgccaacatactcggcgtcctcattatcctgttaacaaaaccgtaa
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