Chitinophaga pinensis: Cpin_3971
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Entry
Cpin_3971 CDS
T00959
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpin_3971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpi03019
]
Cpin_3971
Enzymes [BR:
cpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cpin_3971
Messenger RNA biogenesis [BR:
cpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cpin_3971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Helicase_C_2
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ACU61433
UniProt:
A0A979G686
LinkDB
All DBs
Position
complement(4936081..4937415)
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AA seq
444 aa
AA seq
DB search
MYFDEFDLDDRVLDGIDAMGYTTATPVQEKVIPPIIAGKDILACAQTGTGKTAAFLLPIL
HRLITEPHDARKINSLIIVPTRELAVQIAQTLEGMSYFTSVSSIAVYGGSNGALFAAEKK
ALTSGVDIVICTPGRMIAHLNMGYVKLDAVKYLVLDEADRMLDMGFSDDIIRITSTLPKE
RQNLLFSATMPDKIRKLALKILHQPEEINIAISKPPEKIVQEAFVVFEEQKTGLIKQLLA
RKEFGCIIIFCSRKQNVKQLTYELKKARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVA
TDILSRGIDIEDIDLVINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKEQRKFARIE
EVLGKPVTKAEVPAALGPVPEYSPKPFRSGGGKRPQGKKRPGGGGGGNRNHSKPGGNQGP
RPQGGHPQHHKSKNNSGGKPATQP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
ttgtattttgatgaatttgacctggacgacagggtcctggatggaatagatgcgatggga
tatacgacggcgacgccagtccaggaaaaagttatccccccgattatagcaggtaaggac
attctggcctgtgcccagaccggcaccggtaaaacagccgcttttctgctgcctatactg
caccgcttaatcactgagccccatgatgcacgtaaaatcaactcactgattatagtaccg
acccgtgaactggcagtccagattgcccagacactggagggtatgtcttattttacctcc
gtcagctctatcgccgtatacggtggcagcaacggcgccctgtttgccgccgagaaaaag
gcactgacctccggcgtggatatcgtgatctgcacccccggtcgtatgatcgcccacctg
aacatgggctacgtaaagctggacgcagtaaaatacctcgtgctggatgaagcagaccgt
atgctggacatgggtttcagcgatgatatcatcaggatcacgtctaccctgccaaaggaa
agacaaaacctgctgttctccgctaccatgcccgataagatccgcaaactggccctgaag
atcctccatcagccggaagagatcaatatcgccatttccaaaccgcctgaaaagatcgta
caggaagcttttgtcgtatttgaagaacaaaagaccggcttgatcaaacagctcctggca
cgcaaggaattcggctgtattattatcttctgctcccgtaagcagaacgtaaaacagctg
acctacgagcttaaaaaggcccgtttctccgtagaagagatccactctgacctggaacag
gataagcgcgagcaggtgctcatggatttcaaaaacaagaaactgaaaatgctggtggct
accgatatcctgagccgcggtatagatatagaagatattgacctggttattaattatgac
gtgccaaatgacgcagaggattatatccaccgtatcggccgtaccgccagggcggcgacc
gatggtaccgcatataccattatcagcgaaaaggaacagcgcaaatttgcccgtattgaa
gaagtactgggtaaaccggtgaccaaagccgaagtaccggctgcattaggtccggtgccg
gaatactcccctaaaccattccgctcaggtggcggcaaacgtccgcaaggtaaaaaacgc
ccggggggcgggggcggcggtaaccgtaatcatagcaaaccagggggaaaccagggtccg
cgtccacaaggagggcacccacagcaccataaaagcaaaaataacagcggcggcaaacct
gccacccaaccataa
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