Chitinophaga pinensis: Cpin_5340
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Entry
Cpin_5340 CDS
T00959
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
cpi
Chitinophaga pinensis
Pathway
cpi02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Cpin_5340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpi03021
]
Cpin_5340
Transcription machinery [BR:
cpi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Cpin_5340
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
Sua5_C
F-112
HTH_16
HTH_40
Myo5a
AcMNPV_Orf18
GerE
HTH_23
LasT_C
DUF2774
DUF7697
Motif
Other DBs
NCBI-ProteinID:
ACU62771
UniProt:
A0A979G8K3
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All DBs
Position
6819887..6820540
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AA seq
217 aa
AA seq
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MRILLNICLLLLTQRDHPLFHRVLPDIEKILVRAAAEGDRDAYGQLYTHYYPNLQVAITF
ITQDRDETDELLQETFLRIWKTREKLVLVKSFENYAFRIARNILFDQLRRKKVHLKAIEA
IAQRAAIEESSGEGPLVYKELHDMAIRAINELEPRKREIFLLRTEEGLSFEEIAARYNMA
VVTVKKHYYAAFHVLKTILEQHGGMVSLLFLLWLRGK
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
ttgcgtatcttgctaaatatttgcttattattattgacgcagagggaccatccactattt
catcgcgtactaccggacattgaaaagattttagtacgagcagccgctgaaggcgaccgg
gatgcttatggacagctatatacgcattactaccccaatctacaggtagccatcaccttt
atcacacaggacagggacgaaacagacgaattgctccaggaaacttttctgcggatatgg
aagacccgcgagaagctggtattggtgaaatcgtttgaaaattatgcattcaggattgcc
agaaacattttattcgaccagctcaggcgtaaaaaagtacacctgaaagccattgaagct
atcgcacaacgagccgctatagaagaaagcagcggcgaaggacctttagtatacaaagaa
ctgcatgacatggccatcagagccatcaacgagctggagccccggaaacgggaaatcttc
ctgttacgtacagaagaaggtctcagtttcgaagaaatagccgcccggtataatatggcg
gttgtgactgtaaagaaacattattatgctgccttccatgtcttaaagaccatcctggaa
caacacggaggcatggtatcccttctctttttattgtggttgcggggtaaataa
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