Chitinophaga pinensis: Cpin_5812
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Entry
Cpin_5812 CDS
T00959
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpin_5812
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpi03019
]
Cpin_5812
Enzymes [BR:
cpi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cpin_5812
Messenger RNA biogenesis [BR:
cpi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cpin_5812
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
Utp25_C
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_19
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACU63231
UniProt:
A0A979GYL7
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All DBs
Position
7385413..7386891
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AA seq
492 aa
AA seq
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MCQHHAQKGLVPADSLTTIDHKKLTILSFEQLGLIEPLLKALDNEGYTAPTPIQQQAIPH
VLDTRDLLGCAQTGTGKTAAFAIPLLQLMHQDQQAQQRKGLRNIKALILTPTRELAIQIQ
ESFTAYGKFLDLKSLVIFGGVSQHPQTEALKKGVDILIATPGRLLDLISQNYITLRDIKY
FVLDEADRMLDMGFVHDVQRVIVKLPEQRQSLFFSATMPPEIQTLAKAILRNNPAKVEVT
PVSSTAETITQSMYFVNKNDKRNLLLHILKDKAIKTLLVFTRTKHGADRVVKDLHKAEIT
AEAIHGNKSQNARQRALNNFKSQQTRVLVATDIAARGIDIDELTHVVNYELPNVPETYVH
RIGRTGRAGADGIAISFCEPEEKAFLKDILKLISREIPVETEHPFHNGDSMALPAPKPAP
QQKPKQQHPRDKKGGFSRNRQGVVQSRDARPGAGAGKPNSGKPNGGRPQGGKPKDGNGNS
ARRERPQGMKNY
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcagcatcatgcacaaaaaggacttgttccagctgacagccttaccactattgat
cataaaaaattaactattttgtcatttgaacagttagggctcattgagccgctgcttaag
gccctggataacgagggttataccgctcccacgcccattcagcagcaagccatcccccat
gtacttgatacgagggatttactgggttgcgcccagaccggcactggtaaaacagctgcg
tttgccattcccctgcttcaattaatgcatcaggaccaacaggcccagcaacgcaaaggc
cttcgaaatatcaaagcgcttatcctcacgcctacccgtgaactggctatccagatccag
gaaagctttaccgcctacggtaagttcctcgacctgaaaagcctggtgatctttggtggt
gtatcacaacacccgcaaacagaagcactgaaaaaaggcgtagatatcctgattgcaaca
cccggccgtctgctggacctgatcagtcagaactatatcacactcagagatattaaatac
ttcgtactggatgaagcagacagaatgctggacatgggcttcgtacacgacgtacaacgc
gtgatcgtaaaactccctgaacagcgtcagtcactcttcttctctgctaccatgcctccg
gaaatacagacgctcgcaaaagcgattctgcgtaacaatccggccaaagtggaagtaaca
ccggtatcctctaccgccgaaacgatcacacagtccatgtactttgtcaataaaaatgat
aaacgtaacctgctgctgcatatactcaaggataaagccatcaaaacattgctggtattt
acccgtaccaaacatggtgcagacagagtagtgaaagacctgcacaaagcagaaatcacc
gcagaagcaatccatggtaacaaatcacagaatgcccgtcagcgtgcgctgaataatttc
aaatcacagcagacccgcgtactcgtagcgacagacatcgccgcaagaggtatcgacatc
gacgaactcacacacgtggtgaactacgaactgccaaacgtacctgaaacatacgtacac
cgtatcggtcgtactggtcgcgcaggtgccgatggtatcgcgatctctttctgcgaaccg
gaagaaaaagccttcctgaaagatatcctgaaactgatctcccgcgagattccggttgag
accgaacacccgtttcataacggcgacagcatggcattgcctgcaccaaaaccagctcca
cagcagaaaccaaaacaacaacatccaagagataaaaaaggtggtttctccaggaacagg
caaggtgtggtacagtcaagagatgcaagacctggcgcaggtgcaggaaagccgaatagc
ggtaaaccgaatggtggcagaccacaaggcggtaaacccaaagatggtaatggaaacagt
gcaagaagggaaagaccgcaagggatgaagaattactag
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