Chitinophaga pinensis: Cpin_6494
Help
Entry
Cpin_6494 CDS
T00959
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cpin_6494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpi03400
]
Cpin_6494
Enzymes [BR:
cpi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Cpin_6494
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Cpin_6494
DNA repair and recombination proteins [BR:
cpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Cpin_6494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
YoaP
Pox_A30L_A26L
Motif
Other DBs
NCBI-ProteinID:
ACU63898
UniProt:
A0A979GAP4
LinkDB
All DBs
Position
complement(8156471..8157250)
Genome browser
AA seq
259 aa
AA seq
DB search
MPELPDLQVFSHNLDKALSGKKLKVIKLENTKKAKDTPAAFKKALEGETLESVYREGKEL
RFRFKNEAVLGMHLMLHGKLYYFEEENTNKHTVIALLFEDGKGLALTDFQGAAVPSLNPE
AAAAPDALSKEFTLTFLKEQLAKKKTAVKKILLDQHIIRGIGNAYADEILWEAGISPFSI
ANKIPATKVKALHAAIHNVLKEAEKQIRKEHPDIIAGEIRDFMKIHQPKKTHSPTGGVIE
QQELNSRKTYYTNEQELFE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattaccagatctgcaggtattcagccacaaccttgataaagcattatcaggt
aaaaaattgaaagtcattaaactggagaataccaaaaaagccaaggacacacccgcagct
tttaagaaagcattggaaggtgagacgctggagagcgtttacagagaggggaaggaactg
cgtttcaggtttaaaaatgaggctgtgctggggatgcacctgatgctgcatggcaagttg
tattacttcgaagaagaaaacacgaataaacatacggtaatagcgctgttatttgaggac
gggaaaggacttgcattgacggactttcaaggagcagcagtgccttcactgaatcccgaa
gcagcagcagcgcccgatgcattatcaaaggaattcacattgacatttctgaaggagcaa
ctggcgaagaaaaagacggctgtcaagaaaatactgctcgatcagcatattatcaggggt
attggtaatgcctatgcagacgagatattatgggaagccggtatttccccgttttctatt
gccaataagatccctgcaacgaaggtcaaagcgctgcatgcagcaattcataacgtgtta
aaagaagccgaaaaacagatccgtaaggaacatccggatatcattgcaggtgagatacgt
gattttatgaaaatacaccagcctaaaaagacgcatagtccgaccggaggtgttattgag
caacaagaactgaatagccggaaaacatattatacaaacgaacaggaactgtttgaatag
DBGET
integrated database retrieval system
