Chitinophaga pinensis: Cpin_7273
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Entry
Cpin_7273 CDS
T00959
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cpi
Chitinophaga pinensis
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpi03016
]
Cpin_7273
Enzymes [BR:
cpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cpin_7273
Transfer RNA biogenesis [BR:
cpi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cpin_7273
Prokaryotic type
tRNA splicing ligases
Cpin_7273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ACU64672
UniProt:
A0A979GUR9
LinkDB
All DBs
Position
complement(9091346..9092782)
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AA seq
478 aa
AA seq
DB search
MVYFSIQFIRTHMGNLRTKELSKIGYTNDRARSLVINTISKHFKHHTKEQLLTLLAAVKA
TPEQYLSDEVLGKIAATFIDHEEVCHHQEFALLEQTGRLKIYGAKEIEHGAKKQMELAMS
LPVTVQGALMPDAHTGYGLPIGGVLATANAVVPYAVGVDIGCRMALSIFDEGESFIKRFG
YQMKMALKEWTHFGMEGGLEVAQEHAVLDDPAFQSTEMLRKLQAKAARQLGSSGSGNHFV
EFGMITLAEGNSLGLPAKEYVALLSHSGSRGLGANVAMHYTKIAMDTCKLPREAQQLAWL
DMNSEAGQEYWLSMQLAGDYAKACHDRIHINLAKALGMERLATIENHHNFAWEDTLADGR
KVIVHRKGATPAHKGELGIIPGSMTTAAYLVSGKGEEQALYSASHGAGRAMSRKRARESM
TVSALKKMLAAANVTLIGGSVEENPLAYKDIESVIGAQEELVAMEGRFLPRIVRMHKE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggtatacttttctatacaatttattcgtacccacatgggcaatttacgcacaaaagaa
ctgagtaaaatcggttatacaaatgaccgtgcaagaagtctggtcattaatacaatttca
aaacattttaagcatcatacgaaggagcagttgctcacattgctggcagctgtgaaagct
acgcctgaacaatatctcagtgatgaagtactcggtaagatagccgctacttttattgat
catgaggaggtgtgtcatcaccaggaatttgctttactggagcagaccggcaggttgaaa
atatatggtgcgaaggagatagagcatggcgccaaaaaacaaatggagctggccatgtca
ttacccgtgacggtacagggcgcattgatgccggatgcgcataccggttatggtttgccg
atcggaggtgtactggctactgcaaatgcagttgtaccctatgctgttggtgtggatatt
ggttgccgtatggctttgtccatttttgatgaaggtgagagttttatcaaacgctttggt
tatcagatgaagatggcattaaaggaatggacgcacttcggtatggaaggcggactggaa
gtagcgcaggaacatgcggtgctggatgatccggcgtttcagtcgaccgagatgctgcga
aagctgcaggcaaaagcggcacgtcagctgggaagttccggtagtggtaatcacttcgtg
gaatttggtatgatcaccttagcggaaggcaattcgcttggattgccggcaaaggagtat
gtagcgttgttatcacattccggcagtcgtggtttaggcgcgaatgtagcgatgcattat
acgaagatcgcgatggatacctgtaagttgccaagagaagcgcagcagctggcctggctg
gatatgaacagtgaagcagggcaggaatactggctgagtatgcagctggcgggagattat
gccaaagcctgccatgacaggatccatatcaatctggcgaaggctttgggtatggagcgc
ttagctaccattgaaaatcaccacaattttgcgtgggaagatacgctggcggatggccgt
aaggtgattgttcaccgtaagggggctacgccggcacataaaggagaactgggtattatt
cctggtagtatgacaacggcggcctacctggtgtccggaaagggtgaagagcaggcattg
tattctgcttcacacggagcaggtagggcaatgagccgtaagcgtgcaagagagagcatg
acggtatcggccttaaagaagatgctggcggcggcgaatgttacgctgatcggcggtagt
gtggaagagaacccgctggcctataaggacatagaaagtgtgatcggcgcacaggaagaa
ctggtggcgatggaaggacgattcctgccccgtattgtaagaatgcataaagagtag
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