Chrysemys picta (western painted turtle): 101931509
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Entry
101931509 CDS
T04662
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03008
Ribosome biogenesis in eukaryotes
cpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
101931509 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
101931509 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101931509 (XRN1)
03009 Ribosome biogenesis [BR:
cpic03009
]
101931509 (XRN1)
03016 Transfer RNA biogenesis [BR:
cpic03016
]
101931509 (XRN1)
03036 Chromosome and associated proteins [BR:
cpic03036
]
101931509 (XRN1)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
101931509 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
101931509 (XRN1)
Ribosome biogenesis [BR:
cpic03009
]
Eukaryotic type
Pre-60S particles
RNases
101931509 (XRN1)
Transfer RNA biogenesis [BR:
cpic03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
101931509 (XRN1)
Chromosome and associated proteins [BR:
cpic03036
]
Eukaryotic type
Gene silencing
piRNA pathway
101931509 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D1
Motif
Other DBs
NCBI-GeneID:
101931509
NCBI-ProteinID:
XP_008169702
LinkDB
All DBs
Position
9:complement(67696586..67735189)
Genome browser
AA seq
780 aa
AA seq
DB search
MGVPKFYRWVSERYPCLSQVLKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGD
VLPTEARFDSNCITPGTDFMARLHEHLKYFVNMKISTDKSWHGVTVYLSGHETPGEGEHK
IMEFIRSEKTKPDYDPNTRHCLYGLDADLIMLGLTSHESHFSLLREEVRFGGKKSQRACA
PEETTFHLLHLSLMREYIDYEFSPVKDKISFQYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYKTYMAILPELGGYINESGHLNLQRFEKYLTKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGIAAEEARSHKQKKQKVQENSMCLAALEKTEDGIMTSSKNALEDEQ
EDEDLFETEFRQYKRTYYMTKMGVEVVSDDFLAGQAECYVQAIQWILHYYYHGVQSWSWY
YPYHYAPYLSDIRNISKLKIQFELGKPFMPFEQLLAVLPAASKDLLPKCYEHLMTSEDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLQAMESCNKCLLEDEKQRNTHSECLM
YWYDKDTEFKYLSPWPEKFPAIQRCHTRYKTISLDAWHVEIIHNKITKVNTSALYFCGFP
TLKHIAHKFYLKKSGVQVFQQSSHGENMLLEIICDKDSKEPSVENVASLVLGKSVFVNWP
HLEEARVISVSDGETKFYLEEPHGTQKLYLGNTVPPTKVAYVGEKEQNIWLKEVQGISEQ
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggggtccccaagttctaccggtgggtctcggagcggtatccctgcctcagccaggtg
ctgaaggagcatcagattccagaatttgacaacttgtacctggatatgaatggtatcatc
catcagtgttcacaccctaatgatgacgatgttcacttcagaatctcagatgataagatc
tttgctgatatttttcactacttggaagtattatttcgcattattaaaccaagaaaggtt
ttcttcatggcagttgatggagtggctccaagagcaaaaatgaaccagcagcgtgggaga
cgttttaggtcagcaaaagaagcagaggacaaaataaagaaggctttagaaaaaggagac
gttctccctacagaagccaggtttgactccaattgtattacaccagggactgatttcatg
gccaggttgcacgaacatctgaagtattttgtaaatatgaagatttccacagacaaatcc
tggcatggcgtaactgtctacttatcaggccacgagacaccaggtgaaggagagcataaa
attatggaatttatccgatcagagaaaacaaagcctgattacgatccaaacacaagacat
tgtctatatggtttagatgctgacttgattatgcttggattaacaagtcatgagtcacat
ttctcacttttaagagaagaagtcaggtttggtggcaaaaaatcccagagagcatgtgcc
ccagaagaaaccacatttcacttactgcacttgtcattaatgagagaatatattgactat
gaattttcaccggtaaaagacaagatttcttttcaatatgacattgaaaggataatagat
gattggatcttaatggggtttcttgtaggcaatgactttattcctcatctccctcattta
catattaatcatgatgcgctgccactactttataaaacatatatggctatcctgccagaa
cttggaggctacattaatgaaagtgggcatctgaacttacaacgctttgagaaatatctt
acaaaactgtcagattttgatcgtgaacatttcagcgaagtctttgtagacctaaaatgg
tttgaaagcaaagtaggcaataaatacctcaatgaggcagctggtatcgcagcagaagaa
gcaagaagccataagcaaaagaaacagaaggttcaggaaaactccatgtgtttggctgct
ctagagaaaactgaggatggaattatgacttcttctaaaaatgcattggaagatgaacaa
gaagatgaagacctgtttgagactgagttcaggcaatacaagagaacgtattatatgact
aagatgggtgtggaagtagtttcagatgacttcctcgctggtcaggctgaatgttatgtc
caggcaatacagtggattttgcactattactaccatggggttcagtcatggagctggtat
tatccttatcattatgcaccttacctatcagacattcgcaatatcagtaaactcaaaatc
cagtttgagttaggaaaacctttcatgccatttgaacagcttctagcagtacttccagca
gctagcaaagatctgctacctaaatgctacgagcatttgatgactagtgaagattctcca
atcatagaatactatcctccagactttaaaacagacttaaatggaaaacagcaagaatgg
gaagcagtagtattaatcccatttattgatgagaaacgattgctgcaagccatggaatct
tgcaacaagtgcctactggaagatgagaagcaaaggaatactcacagtgagtgcctaatg
tactggtatgacaaagacacagagttcaaatacctgtcaccatggccagagaagttccct
gctatacaaagatgccacaccaggtataaaacaatatctttggatgcctggcatgtagaa
ataatccacaataagataactaaagttaacacgagcgcattgtatttttgtgggtttcct
actctaaaacatattgcacataagttctatcttaaaaaaagtggggtacaagtattccag
cagagcagccatggtgagaatatgctgttagaaatcatatgtgacaaggattcaaaagag
ccgtctgtagaaaatgtagccagtttggtgcttgggaagtctgtttttgttaactggcca
caccttgaagaagccagagttatttctgtgtcagatggagaaactaagttttacttggaa
gagccacatgggacacagaagctttacctgggaaacactgtgccaccaactaaagtggcg
tatgttggagagaaagaacagaacatctggttgaaagaagttcaggggatttcagaacag
taa
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