Chrysemys picta (western painted turtle): 101931942
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Entry
101931942 CDS
T04662
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101931942 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101931942 (XAB2)
03041 Spliceosome [BR:
cpic03041
]
101931942 (XAB2)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101931942 (XAB2)
Spliceosome [BR:
cpic03041
]
Complex B
Other components
Prp19-related factors
101931942 (XAB2)
Complex C
101931942 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_12
TPR_8
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
RPN7
TPR_1
LTN1_E3_ligase_6th
ATG1-like_MIT2
NRDE-2
Motif
Other DBs
NCBI-GeneID:
101931942
NCBI-ProteinID:
XP_005312815
UniProt:
A0A8C3IDP9
LinkDB
All DBs
Position
Unknown
AA seq
859 aa
AA seq
DB search
MPELEETPVAAGEGKPDLFFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNAPRHVLNLIY
ERALKELPGSYKLWYNYLKQRRKQVKNRCVTDPGHEEVNNCHERALVFMHKMPRIWLDYC
QFLMDQCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSP
ENAEEYIEYLRSIDRLDEAALRLATVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKS
LNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFD
SYAQFEESMIAAKMETTSELGQEEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNV
HEWHKRVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVSFAKFYEDNGQIEDARTI
FEKATKVNFKQVDDLACVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDASEPVQ
NRVYKSLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYALFLEEHTYFEES
FKAYERGISLFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYL
LYAKLEEEFGLARHAMAVYERATRAVQPSEQYEMYNIYIKRAAEIYGVTHTRSIYEKAIE
VLSDEHAREMCQRFADMECKLGEIDRARAIYSYCSQICDPRTTGSFWQTWKDFEIRHGNE
DTIREMLRIKRSVQATYNTQVNFMASQMLKVSSNATGTVSDLAPGQSGMDDMKLLEQRAE
QLAAEAERDKPRAKEKILFVRSDASRSELAALSRQANPDEIDIDEEEEDGGESEENEPDE
VQLEQQSVPSAVFGGLKTD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctggaggagacgccggtggccgccggcgaggggaagccggacctcttcttc
gaggaggaggatctgcagtacgaggaagaaatcctgcgcaaccccttttctgtcaagtgc
tggatccgctacattgagttcaagcagaacgctccccggcatgtgctgaacctgatctac
gagagagccctcaaggagctgccaggcagttacaagctgtggtacaactaccttaagcag
cgccggaagcaggtgaagaacaggtgtgtgactgaccccggccatgaggaggtgaacaac
tgccatgaacgtgccctcgtcttcatgcacaagatgcctcggatctggctagattactgc
cagttcctcatggaccagtgccggatcacccgcacgcgcaggacctttgaccgggcgctc
cgggcgctgcccatcacacagcaccatcgcatctggcccctctacctgaagtttgtgcgc
ttgtaccccctgcccgagacggctgtgcgagtctaccgcaggtacctgaagctgagcccc
gagaacgccgaggagtacattgaatacctgcgctccattgaccggctggacgaggctgcc
ctccgccttgccaccgtggtcaatgacgagaggttcgtctcaaaggaggggaaatccaac
taccagctgtggcacgagctgtgtgacctcatctcccagaaccctgacaaggtgaagtcc
ctcaatgttggggccatcattcgcggaggcctgacccgcttcaccgaccagctgggcaaa
ctctggtgctccctggccgactactacatccgcagcgggcactttgagaaggcacgggac
gtgtacgaggaggccatccagacggtgatgacggtgcgagatttcacccaggtgtttgac
agctatgcccagttcgaggagagcatgattgcagccaagatggagaccacctctgagctg
gggcaggaggaggaggatgatgtggacctggaactgcgcctggctcgctttgagcagctg
atcacacggcgccccctgctgctcaacagcgtgctgctgcgccagaacccccacaacgtc
cacgagtggcacaagcgcgtgaagctctacgagggcaaaccccgagagatcatcaacacc
tacacggaggccgtgcagaccgtggaccccttcaaggccaccggcaagacacacacactc
tgggtctccttcgccaagttctacgaggataatgggcagattgaggacgccaggaccata
tttgagaaagccaccaaggtgaacttcaagcaggtggacgacctggcctgcgtgtggtgc
gagtacggggagatggagctgcgccatgagaactatgaccaggccctgcgcatcctccgg
aaagccacggccatcccagccaagaaagcagagtacttcgatgcctcggagcctgtccag
aaccgtgtgtacaagtccctcaaggtctggtccatgctggccgacctggaagagagtctg
ggcaccttcaagtccaccaaagcggtgtacgaccgcatcctggacctgcgcatcgccacg
ccccagatcatcatcaactatgccctcttcctggaggagcacacctacttcgaggagagc
ttcaaggcctacgagaggggcatctccctgttccgctggcccaacgtgtacgacatttgg
aacacctacctgaccaagttcatcgaccgctatggcggcaagaagctggagcgtgcccgc
gacctcttcgagcaggcgctggacggctgcccccagaaatatgccaagaccatctacctg
ttgtatgccaagctggaggaggagttcgggctggcgcggcatgccatggcggtgtatgag
cgggccacgcgggccgtgcagccctcggagcagtacgagatgtacaacatctacatcaag
cgggcggccgagatctacggggtcacccacacccgcagcatctatgagaaggccattgag
gtactgtcagacgagcacgcccgcgagatgtgccagcgctttgccgacatggaatgcaag
ctgggtgagattgaccgggcccgggccatctactcctactgctcgcagatctgtgacccc
cggaccacaggctccttctggcagacatggaaggactttgagatccggcacgggaacgaa
gacacaatccgggagatgctgcgcatcaaacgcagcgtccaggccacctacaacacccag
gtcaacttcatggcctcgcagatgctcaaagtctccagtaatgccacgggcaccgtgtca
gacctggcgccggggcagagtggcatggatgacatgaagctgctagagcagcgggcagag
cagctggcggccgaggcagagcgggacaaaccccgggccaaggagaagatcctctttgtc
aggagcgatgcgtcacgcagcgagctggccgcactctccaggcaagcgaaccctgacgag
atcgacattgacgaggaggaggaggacgggggtgagagcgaggagaatgagcctgatgag
gtgcagctggagcagcagagtgtcccctcagctgtgttcggggggctgaagaccgactga
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integrated database retrieval system
