Chrysemys picta (western painted turtle): 101933895
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Entry
101933895 CDS
T04662
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101933895 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101933895 (MTREX)
03041 Spliceosome [BR:
cpic03041
]
101933895 (MTREX)
03009 Ribosome biogenesis [BR:
cpic03009
]
101933895 (MTREX)
03016 Transfer RNA biogenesis [BR:
cpic03016
]
101933895 (MTREX)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101933895 (MTREX)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
101933895 (MTREX)
Spliceosome [BR:
cpic03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
101933895 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
101933895 (MTREX)
Ribosome biogenesis [BR:
cpic03009
]
Eukaryotic type
Pre-60S particles
Helicases
101933895 (MTREX)
Transfer RNA biogenesis [BR:
cpic03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
101933895 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
101933895
NCBI-ProteinID:
XP_005300904
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MYCGNACAWGALYCGRTSLLSPPVGWAPTGFPARCSPARAARLPLPAQRRVGGGAGPWCA
RGAVGQAAAMADAFGDDLFSVFEDDSAASGAKKGKAAAAEAASKAGKRSDGKSPAGSTNI
PGKTKREAEVDSTDYAIFGKKSKIEDVSEDINLADLMPKVKVQAVETVEGCTHEVALPAN
EDFIALKPRTGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALAL
REKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRG
SEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHL
HKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKG
DQKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKM
VEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKAL
FATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMV
DEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIP
GVVEKVNKLEEQYNKIEIPNEESVVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRL
VKVKNEDDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAK
PDEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDP
IDDMGIKDQGLKKVIQKIEAFEHRMYSHPLHNDSSLETVYKLCERKAQIAVDIRTAKREL
KKARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFND
LSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYL
NSFRPNLMDVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTEL
ENKFAEGITKIKRDIVFAASLYL
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgtattgtgggaatgcttgcgcctggggcgcgctgtattgtgggagaacatctcttcta
tctccacccgtgggctgggcgcctacgggatttcctgcccggtgcagcccggctcgtgcc
gcgcgccttccccttccggcgcagcgcagggtcggaggaggagcaggtccgtggtgcgcg
cggggcgctgtgggacaggctgcagcgatggcggacgcctttggagacgatctgttcagc
gtgttcgaggacgattccgccgcctctggggccaagaagggcaaagcggccgcggccgag
gctgccagcaaggccgggaaacgctcagatggcaaatctccggcaggctctacgaacatc
ccagggaaaaccaaaagagaggcagaggttgatagcacagattatgctatttttggaaag
aaatccaagatagaggatgtttcagaagatattaatctggcagacctgatgccgaaagta
aaggtgcaagctgttgagactgttgaaggttgtacacatgaggttgcacttcctgcaaat
gaagacttcatagccctcaagccaagaactggaaaagctgcaaaggaatatccattcatt
cttgatgcttttcaaagagaagccattctttgtgtggataacaatcagtctgttttagtg
tcagctcatacgtcagctggcaaaactgtgtgtgcagagtatgcgattgccttggctttg
agggagaaacagcgtgtgatatttaccagtcccattaaagctctgagtaaccagaagtat
cgtgagatgtatgaagaatttcaggatgttggtttgatgactggggatgtcaccattaat
cctacagcttcttgtcttgtaatgacaacagagattttgagaagtatgctctacagaggt
tctgaagttatgcgagaagttgcctgggttatatttgatgaaatccattatatgagagac
tcagaacgtggtgtggtttgggaggagaccattattttgctacctgacaatgttcactac
gtgtttctttctgccactattccgaatgcccgccagtttgctgaatggatttgccatctt
cataaacagccttgccatgtgatttacacagattatcgacctactcctctgcaacattat
atcttcccagcagggggggatggactccaccttgtggttgatgaaaatggtgatttcaga
gaagataactttaacacagcgatgcaagtacttagagatgcaggtgacttagcaaaagga
gaccagaagggcaggaaaggaggaacaaaaggaccatcaaatgtatttaagatagtgaag
atgatcatggaaaggaatttccagcctgtaattatattcagtttcagtaagaaagattgt
gaagcctatgcacttcagatgacaaaattagacttcaacacagatgaagaaaaaaagatg
gttgaagaagtatttaataatgcaattgactgtctttctgatgaagacaagaaacttcct
caggttgagcatgtgcttcctcttttgaagcgaggaattggcattcatcatggtggtttg
cttcctattttaaaggaaacaattgaaattcttttttctgaaggattgataaaggcctta
tttgcaactgagacctttgctatgggaattaatatgccagccaggacagtgctgttcaca
agtgcccgcaaatttgatgggaaagatttcagatggatctcctcaggtgaatatattcag
atgtctggtcgtgcaggacgtcgaggtatggatgacagaggaatagtaattcttatggta
gatgagaagatgagcccaacaattggcaaacagcttcttaagggctcagctgatcctcta
aacagtgcttttcacttgacgtacaacatggtgttgaacttactccgagtagaggaaatt
aaccctgaatacatgttagaaaaatccttctaccagtttcaacactacagagctattcca
ggagtagtagaaaaggtaaataaattggaagaacagtacaacaaaatagaaattccaaat
gaggaaagcgtggtcatctactataaaatccgacagcaactggctaaactgggtaaagaa
attgaagaatatgttcacaagccaaaatactgcttgccgtttttacagccaggcaggctg
gtaaaggtaaaaaatgaagatgacgattttggttggggagtggttgttaacttctccaag
aaatcaaatgttaagcctaactctggtgagctggacccattatatgtggttgaagtccta
ttacactgcagcaaagagagtttgaagaattctgctactgaggctgcaaagccagcaaag
cctgatgagaaaggagagatgcaggttgttcctgttttggtgcatcttctctcagctatc
agcagtgtccgactttacatacccaaagacctgaggcccatcgacaataggcaaagtgtg
ttaaaatccatacaggaagtacagaagcggttccctgatggagtaccattattggacccc
attgatgacatgggcatcaaagaccaaggactgaaaaaagtcatccaaaaaatagaggct
tttgaacataggatgtattcacatccacttcacaatgattccagtctggagactgtatat
aagctttgtgaaagaaaagcacagattgcagtggatattagaacagcaaagcgagaacta
aaaaaagccagaactgtcttacaaatggatgagctcaagtgccgcaaacgtgtattgaga
agattgggttttgccacatcatctgatgtcatagagatgaaaggacgagttgcttgtgaa
atcagcagtgctgatgaactactcctgacagaaatgatgtttaacgggctcttcaatgac
ttatctgcagaacaagcaactgcattactaagctgctttgtatttcaagagaattccagc
gaaatgcccaaattgacagagcaattggcaggaccgcttcgccaaatgcaggaatgtgct
aaaagaattgccaaagtttcagcagaagctaaattggaaatcgatgaggaaaattaccta
aactccttcagacccaacctgatggatgtagtatacacatgggcgaatggagctactttt
gctcacatctgcaaaatgaccgatgtctttgaaggtagcataattcgttgtatgaggcgg
ctcgaagaattgctccgacagatgtgtcaagcagcaaaggccattggaaacacagagctg
gaaaataagtttgcggaaggaattaccaaaatcaagagagatattgtgtttgctgcaagc
ctctacctctaa
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