Chrysemys picta (western painted turtle): 101937703
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Entry
101937703 CDS
T04662
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03013
Nucleocytoplasmic transport
cpic03015
mRNA surveillance pathway
cpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101937703 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
101937703 (DDX39B)
03015 mRNA surveillance pathway
101937703 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101937703 (DDX39B)
03041 Spliceosome [BR:
cpic03041
]
101937703 (DDX39B)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101937703 (DDX39B)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
101937703 (DDX39B)
Spliceosome [BR:
cpic03041
]
Complex C
Other components
EJC/TREX
101937703 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101937703 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101937703
NCBI-ProteinID:
XP_042703382
LinkDB
All DBs
Position
Unknown
AA seq
329 aa
AA seq
DB search
MTVNNDPSCTQDGDGARLGRRGAVSLWGSVRRGTAGGGLTLPPPQVAVFFGGLSIKKDEE
VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP
HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF
DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR
ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKI
LNDVQDRFEVNISELPDEIDISSYIEQTR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgaccgttaataacgacccgagctgcacacaggacggcgacggagccaggctggggcgc
cggggggcagtcagcctgtggggctcagtgcgccgggggaccgccggcgggggtctcacc
ctgccccccccccaggtggcggtgtttttcgggggcctgtccatcaagaaggacgaggag
gtgctgaagaagaactgcccccacatcgtggtggggacgccgggccggatcctggccctg
gcgcgcaacaagagcctcaacctcaaacacatcaagcacttcatcctggacgagtgcgac
aagatgctggagcagctcgatatgcgccgggacgtccaggagatcttccgcatgaccccg
cacgaaaagcaggtcatgatgtttagcgccaccctgagcaaggaaatccgccccgtctgc
cgcaaattcatgcaagaccccatggagatcttcgtggacgacgagacgaagctgacgctg
cacggcctgcagcaatactacgtcaagctgaaggacaatgagaagaaccgcaagctcttc
gacctgctcgatgtgctggagttcaaccaggtggtgatcttcgtcaagtcggtgcagcgc
tgcatcgcgctggcccagctgctggtggagcagaacttcccggccatcgccatccaccgg
ggcatgccccaggaggagaggctgtcccgctaccagcagttcaaggatttccagcgccgg
atcctggtggccaccaacctctttgggcgggggatggacatcgagcgggtcaacatcgcc
ttcaactacgacatgcccgaggactcggacacctacctgcaccgggtggcgcgcgccggg
cggttcggcaccaagggcctggccatcacctttgtgtcggatgagaacgacgccaagatc
ctgaacgacgtgcaggatcgcttcgaggtgaacatcagcgagctgcccgacgagatagac
atctcctcctacattgaacagacccgataa
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integrated database retrieval system
