Chrysemys picta (western painted turtle): 101944572
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Entry
101944572 CDS
T04662
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03013
Nucleocytoplasmic transport
cpic03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101944572 (UPF3B)
03015 mRNA surveillance pathway
101944572 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101944572 (UPF3B)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101944572 (UPF3B)
mRNA cycle factors
P-body specific factors
101944572 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
101944572
NCBI-ProteinID:
XP_005299007
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All DBs
Position
8:45842092..45851762
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AA seq
467 aa
AA seq
DB search
MKEDKENTRPKEKRAPGGPLELRGGGEPERLERPKDKKETLSKVVIRRLPPSLTKEQLEE
HLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRFDGYVFVDHKGQEYAA
IVEFAPFQKSAKKKNKKKDAKTGTIDDDPEYKKFLESYSADDEKLTSTPETLLEEIEARN
KELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERRKWKEEERRKRKEAEK
LKKVDKCPEKERDKSKDEPKIKLLKKPEKDERDLEKKEKFKKLEKEIVREEKAAGALISV
SAKRSDGETKEEKAKKPEDEYGKDYRDRERDFEREREYERQQREKQRRQDEERRRQKERF
EKEKVFRKREEEVKKEINSFREKGRKSELPDFTGNTEKAEKITKDDKKEDAAKRDRIRNK
DRPAMQLYQPGVRSRSRLCPYEDMVTKSVDQGADKQESETSNTKEEE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggataaggagaacactaggcctaaagagaagcgggcgcccgggggccccctg
gagctcagggggggcggggagcccgagcggctcgagcggccgaaggacaagaaggagacg
ctcagcaaggtggtaattcgacgcttgcctcccagcttgactaaggaacaacttgaagaa
catcttcagcctttgcctgaacatgactattttgaattctttgctaatgattccagtttg
tatcctcacatgttttccagagcatacatcaactttaaaaaccaagaagacatagtactg
ttcagggatcgctttgatggttatgtttttgttgatcacaaaggtcaggagtatgctgcc
atagtagaatttgcacctttccaaaaatctgcaaaaaagaagaataagaaaaaggatgcc
aaaactgggactattgatgatgacccagagtataagaagtttttggaaagttacagtgca
gatgatgaaaagttaacatcgactcctgaaacactactagaggaaatagaggcaagaaac
aaagagttaatagctaaaaagacaactccccttctgaacttcttgaaaaacaaacagaga
ttgagagaagaaaaaagagaggagaggagaagaagggaactggaaagaaaaagacaaaga
gaagaagaaaggaggaaatggaaagaagaagaaagaaggaagagaaaagaagcagaaaaa
ctgaagaaagttgataaatgcccagaaaaagaaagggataaatcaaaggacgaaccaaag
attaagctacttaagaaaccagagaaagatgaaagagacttggagaaaaaggaaaagttc
aagaaactggaaaaagaaattgtgagggaagaaaaggctgctggcgcactaatcagcgtg
tcagccaaacgatccgatggggagactaaagaggagaaggcaaaaaaacctgaagatgaa
tatggaaaagattacagggaccgggagagagactttgaaagagagagagaatatgagaga
cagcagcgggagaaacagagacgccaagatgaagagcgtcgtaggcagaaggaacgcttt
gagaaagaaaaagtttttagaaaaagagaggaagaggtgaaaaaggagataaactcattc
agagagaaaggaaggaaaagtgagcttccagactttacaggcaacacagaaaaagctgag
aaaataaccaaagatgacaaaaaagaggatgcagctaagagagatcgcatcagaaataag
gatcgtccagcaatgcagctataccagccaggagttcgaagtcgaagtagactgtgtcct
tatgaagacatggttacaaagtctgtggaccaaggagcagataaacaggaaagtgagacc
agtaatacaaaagaagaggagtga
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