Chrysemys picta (western painted turtle): 101944666
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Entry
101944666 CDS
T04662
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic04382
Cornified envelope formation
cpic04510
Focal adhesion
cpic04512
ECM-receptor interaction
cpic04518
Integrin signaling
cpic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101944666 (COL4A1)
04518 Integrin signaling
101944666 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101944666 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101944666 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101944666 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpic04147
]
101944666 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
cpic00536
]
101944666 (COL4A1)
Exosome [BR:
cpic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101944666 (COL4A1)
Glycosaminoglycan binding proteins [BR:
cpic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101944666 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101944666
NCBI-ProteinID:
XP_008164968
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MRLWRGVGLVLAALLLSEEPGEVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGLIGFPGM
QGPEGPPGPPGIKGDTGEPGLPGTKGTRGPPGVSGYPGNPGLPGIPGQDGPPGPPGIPGC
NGTKGEIGPVGPPGLPGLVGLIGPPGSPGIKGDPGEVIGFLPSNVLKGEKGYPGLPGLPG
MQGLQGLQGPIGPPGISGVPGPPGPRGDPGEKGQMGLSFQGPKGDKGEQGELGTPGPASY
DSKKEYILINGTTGEKGEKGDIGIKGDPGSCFKGEKGEPGKSGPRGKPGKDGEQGPKGNT
GEDGGFGVPGLPGDPGPKGDKGTQGLPGLPGRVISTLETYGEKGDIGPPGFPGLKGEQGE
KGLPGVPGYPGPPGLPSPGITGPPGFPGERGEKGDRGPPGRSLPGSTGRDGFPGPQGFPG
PPGPPGISNGITECQHGEPGDRGLPGPQGQPGFLGERGDKGDKGDGCAFCDVSGLPGHPG
PQGPPGPPGFPGQPGAKGDRGVPGLKGLEGVPGSPGVRGLIGSPGAKGEPGDIYFDSNIK
GDKGDPGFPGQPGVPGREGRPGRDGLPGVQGPKGASGTIGLKGERGPPGSSGFPGVRGER
GQPGLPGVGPAGPAGDKGDKGFPGNPGGPGRPGPKGEAGQVIPLPGPPGSDGLPGPPGFS
GVQGDRGDPGIPGKPGFPGEKGAIGQPGIGFPGPPGPKGFPGQPGTSGQPGAQGRPGFDG
LPGTPGLPGQKGDPGVGLPGPKGLPGPQGPAGFPGEKGNAGLPGLRGEQGFPGVPGQPGI
RGDPGSAGLPGSQGPPGVAGIGPPGPPGPAGGPGPQGPKGFPGTKGERGYPGIPGLDMPG
PKGDKGSSGQSGLPGLVGLPGAPGPQGKGGLPGFPGIKGEMGVMGTPGIPGAPGPLGNPG
LPGEKGTSGFPGTPGPRGDTGFKGSKGEVGLPGKPGTITVTDMENMKGQKGDPGEKGQEG
PIGEKGKTGDYGVAGMPGKDGEPGFPGLPGRKGDQGPPGYPGDPGFPGQKGSIGEMGLPG
TPGEKGVPGVPGSQGIPGYPGLQGAKGDKGESGIPGVGIPGSPGEKGEQGRPGVPGFPGE
KGEKGSAGIAGMPGHPGPKGLPGIAGYPGSPGSQGEKGEKGLSGLDGIPGLKGEPGEPGS
QGSSGVPGQKGEQGYDGIPGSPGAKGDPGIPGRGLPGFPGAKGDKGAKGDVGFPGSPGSP
GIPGSKGEAGFVGPQGPPGQQGTPGLPGRSMEGPKGNRGPPGQPGLSGLPGPMGPPGSPG
LEGAKGEKGNTGWPGPPGRLGIKGDPGFQGIPGTDGLPGNIGQKGDMGPPGVPGFQGPKG
SSGFPGLKGEQGDQGFPGSKGLQGPPGPPGAYQLHKGEPGLPGPVGPVGPKGFPGLPGPK
GQQGVTGPEGIPGQPGNPGFDGQPGQKGEPGPSGPPGPRGARGPQGPEGLPGAMGPPGTP
SVAHGFLVTRHSQTIEEPECPSGTKLMYYGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTVQIPLCPEGWMSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFKKPTPSTLKAGDLRSNVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgtggcgaggcgtggggctggtgctggctgcgcttctgctgagcgaggagccc
ggcgaggtgtccgccgcgggttgttctggctgtggaaaatgtgactgcagtggagtaaaa
gggcaaaaaggtgaaagaggtttgcctggtctacaaggtttaattgggtttcctggaatg
caaggacccgaaggtccccctgggccaccaggaattaagggtgatactggagaaccaggg
ctcccaggaacaaaaggaacaaggggcccaccaggtgtatcaggatatccaggaaaccca
ggtcttcctggcatccctggacaagatggcccaccaggtccacctggtatcccaggttgc
aatggcacaaagggtgaaataggtcctgttggtcctccaggtttacctggattggttggg
ttaataggacctccaggatctcctggaattaagggagacccaggtgaagtgattgggttt
ttaccatcaaatgtgctaaaaggtgaaaaaggttatcctggcctccctgggctaccaggt
atgcaaggattgcaagggctccaaggccccatcgggccaccagggatttcaggagttcca
ggtcccccaggcccacggggtgatccgggtgagaagggtcagatgggcttgagttttcaa
ggaccaaaaggtgataagggtgaacaaggagagctgggcacaccaggacctgcctcatat
gacagcaagaaagagtacattctcataaatggaacgacgggtgaaaaaggtgaaaaaggt
gatatagggattaaaggagatccaggctcatgtttcaaaggggaaaaaggtgaacctggg
aaatctggcccacgaggaaaacctggaaaagatggcgagcaaggaccaaaaggaaacact
ggtgaggatggtgggtttggagttccaggactaccaggtgaccctggtcctaagggagac
aagggcacacaaggtcttccaggacttccaggaagagtaataagtacactggaaacttat
ggtgaaaaaggagacattggtcctccaggttttccaggattaaaaggtgaacaaggtgaa
aaaggtttaccaggtgtaccaggatacccaggtcctccaggtttacctagcccagggatc
acaggtccacctggtttccctggtgagagaggtgaaaagggtgaccgaggtcctccagga
cgctctctgcctggatcaactggaagggatggttttccagggcctcaaggttttccaggt
cctccaggacctccaggcatatcaaatggaatcacggaatgtcagcatggagaacctggt
gatcgaggtcttcctggacctcaaggacaacctggattcttaggagagagaggagataaa
ggtgataaaggtgatggttgtgccttttgtgatgtatctgggcttcctggacatccaggg
ccacaaggtccaccaggtccaccaggctttccaggacagccaggagccaaaggagatagg
ggtgtgcctggactcaaaggtcttgaaggggttcctggttctccaggtgtgcgaggactg
attggtagcccaggagcaaagggagagcccggagacatttactttgattctaatataaaa
ggtgataaaggagatcctggattcccagggcaaccaggtgttcctggaagagaaggaagg
ccagggagagatggcctgccaggtgtccagggccctaaaggggcatcgggtacaattggg
ctgaaaggagaacgtggtccccctggctcaagtggatttcctggggtacgtggtgaaaga
ggccagcctggtcttccaggggtaggacctgctggaccagctggtgacaaaggagataaa
ggctttccaggaaacccaggtggaccaggccgtccagggccgaagggtgaagcaggacaa
gtcattcctctgcctggtcccccagggtcagatggtctcccagggccacctggcttctct
ggagtccaaggtgacaggggggatcctgggattccaggaaaacctggatttccaggagaa
aaaggtgctattgggcagccaggaataggattccctgggcctcctggccctaaaggtttc
ccaggtcagcctggcacatcaggtcagccaggggctcaagggcgtcctggctttgatggt
ttaccaggcacaccaggtttgcctggtcaaaaaggtgaccctggagtgggtctcccgggt
cctaaaggattaccaggcccacagggcccagctggcttccctggagaaaaaggaaatgct
ggtttgcctggcttacgaggagagcaaggatttccaggtgtacctggtcagccaggaatc
cgaggtgacccaggttcagctggattaccaggttcacaaggtcccccaggtgtggcagga
ataggccctccagggccccccggacctgcaggaggaccagggccacagggaccaaaagga
tttcctggaacaaagggagagaggggctacccaggtatcccaggactagatatgccagga
ccaaaaggagataagggtagctctggccagagtgggctaccaggtctggtaggtttacct
ggtgcacctggtccacaaggaaaaggtggacttccaggctttccaggcatcaaaggagaa
atgggagttatgggaacccctggaatcccaggtgctcccgggccactaggaaatccagga
ttaccgggtgaaaaaggtacttcaggttttccaggtacgccagggccacgaggtgatact
ggtttcaaagggagtaaaggtgaagtaggtctaccaggaaaaccaggaaccataacggta
acggacatggaaaatatgaaaggccaaaagggagacccaggagaaaaaggacaagaagga
ccaataggagaaaagggaaaaacaggggattatggtgtagcaggaatgccagggaaggat
ggtgaacctggcttcccaggacttccaggacgaaaaggtgatcaaggccctccaggatac
ccaggtgacccaggatttccaggacaaaaagggtcaattggagaaatgggtttgccagga
acacctggagaaaaaggtgtaccaggtgtgccaggctcacaaggtataccagggtaccct
ggattacaaggtgcaaaaggagacaaaggagagtcgggtattccaggggttggcattcca
ggttctccgggtgagaagggagaacaaggaagaccaggtgttccaggcttccctggtgaa
aaaggtgaaaagggtagtgcaggaattgcaggaatgcctggtcatccaggtcccaaagga
ttacctggcattgcaggatatccaggcagcccaggtagccagggagaaaagggtgaaaaa
ggactctctggtttggatggcattccaggtttaaaaggagaaccaggtgagcctggttct
caaggttcctctggtgtccctggacagaaaggtgaacaaggttatgatggaattccaggt
tcgcctggagcaaagggtgatccaggtattccaggtagagggcttccaggatttcctggt
gcaaaaggagataaaggtgcaaaaggcgatgtgggttttccaggatccccaggaagcccg
gggattcctggctcaaaaggagaagcaggatttgttggtccacaaggtcctccaggccaa
cagggcactcctggactaccagggagatcaatggaaggtcctaagggaaacagaggaccc
ccaggtcaacctggactttcaggtctaccaggtccaatgggaccaccaggatctccgggc
ctggaaggagccaaaggagaaaaaggaaacacgggttggcctggaccacctggaagactt
ggaatcaaaggtgatccgggattccaaggcattcctggtactgatggtttaccaggaaat
attggtcaaaagggtgatatgggacctccaggagttcccgggtttcaaggtccaaaagga
tcttctggcttcccaggtctcaagggagaacaaggtgaccaagggtttcctggctctaaa
ggtttacaaggtccaccaggtcctccaggtgcatatcagcttcataaaggggaaccaggt
ttacctggacctgtcggaccagttggtccaaaagggttccctggacttccaggtccaaaa
ggacagcaaggagtgacaggacctgagggtatacccgggcaacctggtaatccaggattt
gatggtcaacctggtcagaaaggagaacctggtccttctggtcctccaggtccgcgagga
gccagaggtccacaaggccctgagggtttaccaggtgctatgggcccgccaggcacacca
tctgtcgctcatggcttccttgttaccagacacagccaaaccattgaagaaccagaatgt
ccatctggaactaaactgatgtactatggctactccttactttacgtacaaggcaatgaa
agggcacatggtcaggatttgggcacagcagggagctgtcttcgtaaatttagcactatg
ccattcttgttctgcaacatcaataatgtatgcaactttgcatcaaggaatgactattcc
tactggctgtctactcctgaacccatgccaatgagtatggcacctatcactggtgacaat
atcaggccattcatcagtagatgctctgtatgtgaggctcctgccatggtaattgcagtt
cacagccaaacagttcaaataccattgtgccctgaaggctggatgtcgctttggattggt
tactcctttgtaatgcataccagcgctggtgctgagggttccggacaagctctggcatct
ccaggttcctgtctagaggagttccgcagtgctcccttcatagaatgccatggtcgtgga
acttgtaactattatgcaaatgcttacagcttttggcttgccactatagagagaaatgag
atgttcaagaaacctactccttcaactctgaaagcaggggacttgcgctcaaacgttagc
cgttgtcaagtctgtatgagaagaacataa
DBGET
integrated database retrieval system
