Chrysemys picta (western painted turtle): 101945224
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Entry
101945224 CDS
T04662
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic04510
Focal adhesion
cpic04512
ECM-receptor interaction
cpic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101945224 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101945224 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101945224 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpic04147
]
101945224 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
cpic00536
]
101945224 (COL4A4)
Exosome [BR:
cpic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101945224 (COL4A4)
Glycosaminoglycan binding proteins [BR:
cpic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101945224 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101945224
NCBI-ProteinID:
XP_023959035
LinkDB
All DBs
Position
9:complement(64907367..65034728)
Genome browser
AA seq
1675 aa
AA seq
DB search
MPSAGLLLSAPTWWLVTVFSVQQIYGGKYSYIGPCGGQDCSVCQCFPEKGSRGQPGHLGA
QGPIGSLGCTGPAGLQGEKGQRGENGLPGPAGEKGDKGPTGVPGFPGLDGVPGYPGIEGS
RGKPGLDGCNGSRGEPGFPGETGCIGPRGSFGVLGQKGEKGNSAYISDFIRGAPGARGEP
GPPGTPGPRGARGPMGRHGLPGQPGLQGATGLPGLQGEQGNPGIGVDGQKGEPGDVGPPG
SPGQPLLVWPPGSFLVKGEKGVKGMPGLVGPKGSPGPKGAPGNGEKSEKGIPGVPGMQGS
PGSCGARGFPGIKGESGVPGVPGQAGYAGIKGDCGERGQPGLPGVFGTPPVAMKGPRGDP
GSPGPSGEEGLIGLTGPPGPSGRPGEDGASLPGLPGACGEQGPKGSQGDPGLPGTAESTP
GRPGSPGAPGLPGAPGRQGLPGPPGIVCHGRGLRGQQGIKGQMGPLGRRGEKGEKGNHGH
CSCDLGPAGPPGRRGPLGHQGRKGQMGFPGSYGEKGDPGFSGTIGPTGLPGKPGSSGITG
EKGEKGDLARVKIKGIKGKRGPLGAPGLPGQKGTAGRDGDPGLPGERGIQGDGGSALPGD
KGFLGAPGLPGSRGSMGPSGLGFPGPPGIGGHPGDPGSTGISGLPGQKGQKGDIHCYVPP
YPGSPGPPGFQGAQGPKGLRGPPGPPGPNGFDGQKGQRGKPGTSGDIGPNGFRGNAGDPG
DEGERGSSPDGAPGFPGTPGLAGQKGVPGDTSYGLPGIPGHRGLPGLSGSQGIRGESGAP
GPQGQSGRPGFPGAKGLRGRKGEIGAPGSPGQPCDKGLQGPPGQPGVLGQQGPPGLPGFK
GQKGDMGPPGPAGIKGLPGTPGVPGSPGPPGPRGYPGLPGNDGLPGLPGQRGSKGVQGIQ
GFPGIPGKGGQTGIPGGNGEQGEMGSRGPSGECGDGGQKGERGAQGDSGFITLWLEKGQK
GEQGLPGEAGFPGETGEKGSPGIRGISGFPGKDGLPGIQKGEPGDSGQIGFPGLPGFPGS
AGLGGISGFQGQPGDQGERGLPGIPGCPGHDGTKGLKGNRGDSGSQRGPPGQRGPPGDHG
SPGPCGFPGEQGLPGFQGEPGRQGPKGMPGSPGANGFPGAICDSGLPGVPGEQGNTGPLG
AAGLPGLPGPPGRKGLSGLPGLDGLNGLQGQKGSPGVPGQSEIGPSGSTGAPGPKGDKGE
PGQPGVSLPGPPGDMGLPGHPGRTGGPGPAGPVGRSPETAASGPPGDQGPPGSHGIRGLP
GHPGPPGKTIFVKGDPGEFGVPGAPGIPGQPGQQGAKGFPGNRGREGLKGPMGNPGPQGS
PGPFGPSGDRGFQGQPGPRGPEGCRGDPGEPGKTEHSPCPKTPGPRGVIGQRGAEGPIGF
PGPIGYPGPPGSKGEEGLFGLPGQDGLPGPPGPSGNQGVIGERGYTGPEGPPGQAGIPGP
PAPETRAASGFLLILHSQSDKEPFCPEGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLP
VFNTMPFVYCNINQVCYYASRNDKSYWLSTAAPLPMMPLSEDEIQPYISRCAVCEASAQA
VAVHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSAPFIECQ
GQRGTCHFFANEYSFWLTIVRPELQFVSAPLSETLKEGQEQRKKISRCQVCMKHG
NT seq
5028 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcgcagggcttcttctaagcgctcctacctggtggctagtgacagttttttca
gtgcaacaaatttatgggggcaaatattcatatattggtccatgtggaggacaagattgt
tcagtttgccagtgctttcctgaaaagggatcaagaggtcagcctggtcacctaggggct
caaggtccaattggatctttgggatgtacagggccagctggtttgcaaggagaaaaagga
cagagaggtgagaatgggctgcctgggcccgctggagaaaagggtgataagggcccaaca
ggagtcccaggatttcctggtttagatggtgtgcctggatatcctggaattgaagggtcc
aggggcaaacctggcttggatggctgcaatggttcaagaggagagcccggatttccagga
gagacagggtgtattggaccaagaggctcatttggtgttcttgggcaaaaaggagaaaaa
ggaaactctgcatatatttcagatttcattagaggtgctccaggagcaagaggtgaaccg
ggcccccctggcacacctggacctagaggagctaggggaccaatgggccgacatggattg
ccaggccaaccaggcttgcagggagctacaggccttcctggtttgcaaggtgaacagggc
aatccaggtattggagtggatggacaaaagggggagccgggtgatgttggacctcctgga
tctccaggacagccattgttggtttggccgcctggttctttcctggttaaaggagaaaag
ggtgtaaaaggaatgcctgggttggtaggacctaaaggatcacctgggcccaaaggtgca
cctggaaatggagagaagagtgaaaaaggtattcctggagtccctggaatgcagggtagc
cctggttcttgtggagctcgcggttttccaggaataaagggggaaagtggagttcctggt
gttcctggtcaggctggttatgcaggaataaagggggattgtggagaacgagggcaacca
ggcctgcctggagtttttggaacaccacctgttgctatgaaaggtcctcgaggggatcct
ggatcaccaggtccttctggagaggaggggttgattggactaactggtcctccaggccca
tcaggaagacctggtgaagatggagcaagcctccctggtctgccaggagcatgtggggaa
caaggtcctaaaggttctcaaggggaccctggtctccctggaacagctgaatcaactcca
ggaagaccagggtctccaggagcaccaggattaccaggagcaccaggaagacagggtttg
cctggaccacctggtatagtttgtcatggcagaggacttcgtggacagcaaggaataaaa
ggccaaatgggacccctgggaagaagaggtgaaaaaggagaaaaagggaatcacggccac
tgttcatgtgaccttggtcctgctggcccacctggtagacgagggccacttggtcatcaa
ggaaggaaaggacagatgggatttcctggaagctatggagaaaagggtgatccaggtttc
tctggcacaataggaccaacaggactcccaggcaaacctggttcttctggaataactggt
gaaaaaggagaaaagggtgacctggccagagtgaaaatcaaaggaataaaaggaaaaaga
ggacctctgggggctccagggcttccaggccaaaaaggtactgctggcagagatggagat
ccaggattgcctggagagagaggaattcaaggtgatggtggatcagcactgccaggtgat
aaaggttttcttggggcaccaggacttcctggttcaagagggtctatgggaccatcaggt
ttgggatttcctggcccaccgggaatcgggggtcatcctggagacccaggaagtactggt
ataagtgggctacctggtcaaaagggtcaaaaaggtgatatccactgttatgttccacca
tatcctggaagtccaggccctccaggttttcaaggggctcaaggaccaaagggattaaga
ggaccccctggtcctcctgggccaaatggctttgatgggcaaaagggccaacgaggcaaa
ccagggacatcaggtgatatagggccaaacggctttcgaggcaatgctggtgatccaggt
gatgaaggtgaaagaggttcttctcctgacggtgccccaggttttcctggcactcctgga
cttgcaggccagaaaggtgttccaggtgatactagttacggtcttccaggaattccaggc
cacagaggattgccaggattatctggttcacaaggaatacgaggtgaatcaggtgctcct
gggccacaaggacagtctggcagaccaggatttccaggtgctaaaggtctgagaggcaga
aaaggtgaaataggcgctccaggctcacccggtcagccatgtgataaaggcttacaaggg
ccaccaggacagccaggagttcttggacagcaaggccctccaggcttaccaggttttaaa
ggtcagaaaggagacatgggcccaccagggccagctggaataaaaggcctaccaggaact
cctggtgtaccagggtcccctggtcctccaggccctcgaggatatccagggcttcctggg
aatgatggattacctggactcccgggccaacgaggtagcaaaggcgtccaaggcatccaa
ggttttccaggaatcccaggaaaaggaggacagacaggaatcccgggtggaaatggtgaa
caaggagaaatgggttcaagggggccttctggagaatgtggggatggagggcaaaaaggt
gaaagaggtgctcaaggagacagtggcttcattaccttatggctggagaaaggacaaaag
ggagaacaagggcttcctggtgaggctgggtttccaggggaaacaggtgaaaaaggcagt
cctggaatcagagggatctcaggatttccaggcaaagatggactcccaggaattcagaag
ggtgaacctggtgatagtggacagattgggtttccagggctgccaggcttcccaggatcg
gcaggtttaggaggaattagtggttttcaagggcaaccaggtgaccagggtgaacgaggt
ttaccgggaattcctggatgtccagggcatgatggtacaaaaggacttaaaggtaacaga
ggtgactcgggcagtcaacgtggtccacctggtcaaagagggcctccaggagatcatgga
tcaccaggaccctgtggattcccaggagagcagggtttaccaggtttccaaggggaacct
ggaagacaaggacccaaggggatgcctggatccccaggagcaaatggctttccaggtgcc
atatgtgattcaggattgccaggagttccaggtgaacaaggtaataccgggcctttagga
gctgcaggattgccaggattacctggtcccccaggcagaaaaggtttatcagggttgcct
ggattagatggcttgaatggactgcaaggtcaaaagggctcaccaggagttccaggtcaa
agtgaaatagggccttcaggatccacaggagcacctggaccaaaaggagacaagggtgaa
cctggacagccaggagtttctcttccaggacctcctggagacatgggtttgccaggacac
ccaggtagaacaggaggtcctgggcctgcgggacctgtgggaagatctcctgaaactgca
gcttctggtcctccaggtgatcaggggccacctggctcacatggcatcagaggcctgcct
ggccatcctggccctcccggaaagactatctttgtgaaaggcgatccaggggaatttggt
gttccaggtgcacccggtattcctggccagccagggcagcaaggagccaaaggctttcca
ggaaatcgaggaagagaaggcctgaaaggtccgatgggaaaccctggcccccagggttcc
cctggcccttttgggccatctggggatcgaggttttcaaggacaacctggccctcgaggt
cctgaaggttgcagaggtgaccctggtgaaccaggaaaaacagaacactccccatgtccc
aagacaccgggtcctcgtggagtaataggacaaagaggagctgaagggcctataggattt
ccaggtccaataggttaccctggacccccaggaagtaaaggtgaagaagggttgtttggc
ttgccaggtcaagatggtttacctggtccaccaggaccctcaggtaaccaaggtgtcata
ggagaacgaggatacactggtccagaaggtccacctggccaagctgggatcccaggacca
ccagcgcctgaaactagagctgcaagtggattcctgctcattcttcacagtcagtcagat
aaagaaccgttttgtcctgagggaatgccaagattgtggacaggatatagtctgctgtat
ctggaaggacaggagaaagctcataatcaagatcttggtctggctggatcttgtcttcct
gtattcaacaccatgccatttgtctactgcaacatcaaccaagtttgttactatgccagt
cgaaatgataagtcctactggctgtcaactgctgctcctttaccaatgatgccgctctct
gaagatgaaatacaaccctacattagcagatgtgctgtatgtgaggcctctgcccaagct
gtagcagttcatagccaagatcagtccattcccccctgcccattgaactggagaagtctt
tggataggctattcttttttaatgcacactgggtctggagatcagggaggtggacagtcc
cttatgtcacctggaagttgccttgaagactttagatcagcaccattcatcgaatgccag
ggtcagcggggaacatgccatttttttgctaatgaatatagcttctggttaacaatcgtc
aggccagaattgcagtttgtgtctgctcctctgtcagaaacccttaaagaagggcaggaa
cagcgcaaaaaaatcagcagatgtcaggtctgcatgaagcatggctaa
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integrated database retrieval system
