Chrysemys picta (western painted turtle): 101946235
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Entry
101946235 CDS
T04662
Symbol
SKIV2L
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101946235 (SKIV2L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101946235 (SKIV2L)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101946235 (SKIV2L)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101946235 (SKIV2L)
mRNA degradation factors
3'-5' decay
Ski complex
101946235 (SKIV2L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
MTR4_beta-barrel
Helicase_C
DUF3516
PhoH
Motif
Other DBs
NCBI-GeneID:
101946235
NCBI-ProteinID:
XP_042703243
LinkDB
All DBs
Position
Unknown
AA seq
1146 aa
AA seq
DB search
MSWRRGEHFRSRGRPAGDMERMKLPPRGPRLELPLSMLQVGCAGRFELITRPEGPDGDTF
PLCTLPHGLPPYAMDLASELERRFLASPEWLPLHRFDRAPRVWPREKDVWSLLETDPTPV
HSTLQTERDPTTGQILAFREAPLDNMGLSAKNSLSFQRAPGPPAQALRGSSTNYPFWPGG
MDEPSMEQISAKDHLEEDIDFERDLLTVPPGWKKGVEFKPQAAALQASPGLLPLSGLLGA
LDSFELGGSSDEEEEEKRKTKAKGPGGKEGETSPAPTPAVQRADSLEELVLKEVTPGPPP
PVQAVPPQPPKEQWAIPVDISSPVDDFYKRIPDPAFRWPFEPDVFQKQAILHLEKHDSVF
VAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQL
HPDASCLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVN
IILLSATVPNTLEFADWIGRIKRKRIYVISTRRRPVPLEHHLYTGNSHKTQHELFLLLDA
RGTFLTKGYYAAVEAKKERSSKHAQTFGAKQPTHMGTGPGQEKGVWLSLMDALRKRDQLP
VVAFTFSRARCDDNASALTTLDLTTSAEKSQIHLFFQKCLSRLKGSDRQLPQVLHMVELL
KRGIGVHHSGILPILKEVVEMLFSKGLVKILFATETFAMGVNMPARTVVFDSVRKHDGSG
FRDLLPGGGSPHPPAAAPQGTPLSRRSRGPPHPPAAPQGKPTQLQSQFRLTYTMILNLLR
VEALRVEDMMKRSFSEFHSRKDSQAHEHTIAQLSRRLAAMEEVDTSGQLSDLPEYGRAVQ
ELQETRRMIQRRVAESASGLKALAPGRVVIVNNPAHRNALGVILQVSSDAANRTFTTLVL
CEKSPEGGDTGGGSPTPEAPFPDDLLLNKLFLPEGRGLGARTPGFSPRLSEGSGGWWPPT
VLRALRYVDAGGAVQLAGRVACEISNHELLLTELVFDNLLTELRPEESVALLSCLVCQTK
SQAEPPVPSVLRKGMERIRAVAERIALLQRECGLRESVEDFVAQYNFGLVEVVYEWARGM
PFAEIARLTEVQEGIIVRCIQRLDETCRDVRNAARVIGEPTLHAKMEQASNLIKRDIVFA
ASLYTQ
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgagctggcggaggggggagcacttccggagcagggggcggcccgcaggggacatggag
agaatgaagctgcccccccgggggccccgactggagctgcccctctccatgctgcaagtg
ggctgcgccggacgcttcgaactcatcacccggccggaggggcccgacggggacacgttc
cccctctgcacgctgccccacggcctgcccccctacgccatggacctggcctcggagctg
gagcggcgcttcctggccagccccgaatggctgcccctgcaccgcttcgacagggccccc
agggtctggccacgggagaaggacgtctggtcgctgttggagacggaccccacccccgtg
cactccacgctgcagacggagcgggaccccaccacggggcagatcctggccttcagagag
gcgccgttggacaacatggggctgtcggccaagaactcgctctccttccagcgggcacca
gggccccctgcccaggccctgcggggcagcagcaccaactaccccttctggccaggtggg
atggacgagcccagcatggagcagatcagtgccaaagatcacctggaggaggacatcgac
ttcgagagagacttgctgacggtgccgccgggctggaagaagggggtggagttcaagccg
caagctgcggcactccaggcttccccggggctgctgcccctgtccggcctgctgggggcg
ctggactcctttgagctgggcggctccagtgacgaggaggaggaggagaagaggaagacg
aaggccaaggggccaggggggaaggagggagagacgtccccagcccccaccccggccgtg
cagagggcagacagcctagaggagctggtgctgaaggaggtgacccccgggcccccgccg
cccgtccaggctgtgcccccccagccccccaaggagcaatgggcgattcccgtcgacatc
tcctcgcctgtggacgacttctacaaacgcatccccgacccggccttccggtggccgttc
gagccagatgtgttccagaaacaggccatcctgcacctggagaagcacgactcggtcttc
gtggccgcgcacacctcggcggggaagacggtggtggccgaatacgccatcgccctggcc
cagaagcacatgaccaggaccatctacacttcccccatcaaggctctgtccaaccagaag
ttccgagatttcaagaacacctttggggacgtggggctgctgacgggggatgtccagctg
caccccgatgcctcctgcctcatcatgaccaccgagatcctgcggtccatgctgtataac
ggctcagacgtgatccgggatctggagtgggtgatctttgacgaggttcattacatcaac
gatgcagagcgcggcgtggtgtgggaggaggtgctgatcatgctgccggagcacgtgaac
atcatcctgctaagtgccaccgtccccaacacgctggagttcgccgactggatcgggcgg
atcaagcggaagcggatctacgtgatcagcacccggcggcgccccgtgcccctcgagcac
catctctacacgggcaacagccacaagacccagcacgaactcttcctgctcctcgacgcc
cgcggcaccttcctcaccaaggggtactatgcggcggtggaggcgaagaaggagcgctcc
agcaaacacgcccagaccttcggggccaagcagcccacacacatgggcaccgggccgggc
caggagaagggcgtgtggctctcgctgatggatgcgctgcggaagcgggaccagctgccc
gtggtggccttcaccttctcccgcgcccgctgcgacgacaacgcgtccgcgctcaccacc
ctcgacctgaccacgagcgccgagaagagccagatccacctcttcttccagaagtgcctc
tcccgcctcaagggctccgaccgccagctgccccaggtgctgcacatggtggagctgctg
aagcggggcatcggggtgcaccacagcgggatcctgcccatcctcaaggaggtcgtggag
atgctcttcagcaaagggctggtcaagatcctcttcgccaccgagacctttgccatgggg
gtgaacatgccggcccgcaccgtggtcttcgactccgtccgcaagcacgacggctccggc
ttccgtgacctgctgccaggtgggggatcccctcacccgccagccgccgccccccagggg
accccccttagccgccgctcccggggaccccctcacccgcctgctgccccccaggggaag
ccgacccagctgcagtcccagttccgcctgacctacaccatgatcctgaacctgttgcgg
gtggaggcgctgcgcgtggaggacatgatgaaacgcagcttctccgagttccacagccgc
aaggacagccaggcccacgagcacaccattgcccagctgagccgccggctggccgccatg
gaggaggtggacacgagcgggcagctgagcgacctgccggagtacggccgggccgtgcag
gagctgcaggagacgcgccgcatgatccagaggcgggtggcggagtcagccagcgggctc
aaggctctggccccgggtcgagtggtgatcgtcaataacccggctcaccggaacgccctg
ggggtgatcttacaggtctcctcagacgcagccaaccggacgttcaccaccctggtgctg
tgtgagaagagccctgaggggggggacacgggagggggcagccccaccccggaggctccc
ttccccgacgacctgctgctcaacaagctctttctgccggaaggtagggggctgggagcc
cggacgcctgggttctctccccggctctcggaggggagtgggggctggtggccccccacg
gtgctgcgggcgctgcgctacgtggacgcggggggcgcggtgcagctggccgggcgcgtg
gcctgcgagatcagtaaccacgagctgctgctgacggagctggtgttcgacaacctgctg
acggagctgcggccggaggagagcgtggccctgctcagctgcctggtctgccagaccaag
agccaggccgagcccccggtgcccagcgtcctccgcaagggcatggagcggatccgggca
gtggccgagcgcatcgccctgctgcagcgggagtgcggcctgcgggagtcggtggaggat
ttcgtggcccagtacaacttcggcctggtggaggtggtgtacgagtgggcccgcggcatg
cccttcgccgagattgcccggctgacggaggtgcaggaggggatcatcgtgcgctgtatc
cagcggctggacgagacgtgccgggacgtgcgcaacgcggcccgcgtcatcggggagccc
acgctgcacgccaagatggagcaggcctccaacctcatcaagagagacatcgtctttgcc
gccagcctctacacgcagtga
DBGET
integrated database retrieval system
