Chrysemys picta (western painted turtle): 101948208
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Entry
101948208 CDS
T04662
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101948208 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpic03041
]
101948208 (SF3B1)
03036 Chromosome and associated proteins [BR:
cpic03036
]
101948208 (SF3B1)
Spliceosome [BR:
cpic03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101948208 (SF3B1)
Complex B
101948208 (SF3B1)
Complex C
U2 SnRNP specific factors
101948208 (SF3B1)
Chromosome and associated proteins [BR:
cpic03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
101948208 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
101948208
NCBI-ProteinID:
XP_005294349
UniProt:
A0A8C3IAY7
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All DBs
Position
11:complement(1777569..1819155)
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGTSSQPPSKRKRRWDQTADQTPGTTPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSVGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagaaattcaagga
aaaaaggctgcccttgatgaagctcagggagtaggccttgattctacaggatactatgat
caagagatttatggtggcagtgacagcaggtttgctggatatgtgacttctattgcagca
actgaactagaagatgatgatgacgactactcctctacaagtttgcttggtcagaagaag
ccagggtaccatgctccagtggcattacttaatgatataccacagtcaactgaacagtat
gatccctttgctgaacatcgtccacagaagattgcagatagagaagatgaatataaaaag
cacagacggatgatgatcatttctcctgagcgtcttgatccttttgcagatggagggaag
acacctgatcctaaaatgaatgccagaacatatatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagcagaaaaagctaaagctggggaactt
aaagtcgtcaatggcacctcctcccagccaccttcaaaacgcaaacgtcgttgggatcaa
acagctgaccagactcctggtactactcctaaaaaactatccagttgggatcaagcagag
acccctggacatactccttctttgaggtgggatgaaactcctggccgtgcaaagggtagt
gagactcctggagcaaccccaggctcaaaaatatgggatcctactcccagtcatacacca
gcaggagctgcaacccctggacgggacacacctggtcatgcaactccaggccatggaggt
gcaacttccagtgcacgtaaaaatcgatgggatgagacccccaaaacagaaagagataca
ccgggacatggcagtggatgggctgagactcctcgaacagatcgaggtggtgattcagtt
ggtgaaaccccaactcctggagcaagtaaaaggaagtcacgttgggatgaaacacctgct
agccaaatgggtggtagtactcccgttttgacacctggcaaaacaccaattggtacacca
gccatgaatatggcaacccctacgccaggtcatataatgagcatgactcctgaacagctg
caggcatggcgctgggaaagagaaatagatgagagaaaccggccactatctgatgaagaa
ttggatgccatgttcccagagggatataaggttcttccccctccagctggttatgtgcct
attcgtactccagctcgcaaacttacagcaactcccacgccattgggtggtatgactgga
ttccacatgcaaacagaagataggaccatgaagagcgttaatgaccaaccatctggaaat
cttccattcctaaaaccagatgatattcaatattttgataaactattggttgatgttgat
gaatcaacgcttagtccagaagaacagaaagaaagaaaaataatgaaattgctcttgaaa
ataaagaatggtacacctccaatgagaaaagctgctttgcgtcagattaccgataaagct
cgtgaatttggagcaggtccgctgtttaatcagattctacctctgctgatgtcaccaaca
cttgaagatcaagaacgtcacttgcttgtcaaagttattgatagaatcttatacaaactg
gatgatttggtccgaccatatgtacacaagattcttgtggtcattgaaccactgctgatt
gatgaagactactatgcgagagtggaaggcagagaaattatatcaaacttggctaaggct
gctggtttggctacaatgatctccaccatgcgacctgatattgataacatggatgagtat
gtccgaaatacaacagctcgagcctttgctgttgttgcctctgctttaggcattccttct
ctgttgcccttcttgaaagctgtatgtaagagcaaaaaatcctggcaagctaggcacact
ggcatcaagattgtacagcaaattgctattcttatgggctgtgctatcttgcctcatctc
agaagtttggttgaaatcattgaacatggtctggtggatgagcagcagaaagtgcgcacg
atcagtgctttggcgattgctgctttggctgaggcagctactccttatggtattgaatca
tttgactccgttctaaagcccttgtggaagggcatacgtcagcacagaggaaagggtctg
gctgcctttttgaaagctattgggtaccttatccctcttatggacgctgagtatgccaac
tactataccagagaagtaatgctaatccttatccgagagttccagtctcctgatgaagaa
atgaaaaaaattgtgttaaaggtagtaaagcagtgttgtggtacagatggcgttgaagcc
aactacattaaaacagagattctgccgccgtttttcaaacacttttggcagcacagaatg
gcactggacagacgaaattacagacagttggttgataccacagtggagctggcaaacaaa
gtcggagcagcagaaattatttccaggattgtggatgatctgaaagatgaggctgaacag
tacagaaaaatggttatggaaacaattgaaaaaataatggggaacctgggtgcagcagac
attgaccataaactagaagaacaacttattgatggtatcctgtatgccttccaggaacag
accacagaggactctgtgatgttgaatggctttggcacagtggttaatgctcttggcaaa
cgagttaaaccatacttgccccagatctgtggtacagttttatggcgtttgaacaacaaa
tcagccaaagttaggcagcaggctgctgacctgatctcacgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgttgtcctgtatgagtatctgggt
gaggaataccctgaagtattaggcagtatacttggagcacttaaagccattgtgaatgtt
ataggtatgcacaagatgacgccaccaattaaagacctgctgccaagactcacacctatc
ttgaaaaacagacatgagaaagtacaggagaattgtatcgacctagttgggcgtattgct
gacaggggtgcagaatatgtttctgcaagggaatggatgaggatctgttttgaactgctg
gagttgttaaaagctcacaagaaagctatccgacgagccacagtgaacacttttggttat
attgcaaaagctattggaccccatgatgtgctggctacactgctaaataacctgaaagta
caggaaagacagaacagagtatgtactacagtagcaattgctattgtagctgaaacatgc
tcacctttcacagtactgcctgctctgatgaatgaatacagagttccagaactgaatgtc
cagaatggtgtattaaaatctctttcttttctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagagaccttgta
cacagacaaacagccagtgctgtggtgcagcatatgtctcttggagtatacggatttggc
tgtgaggattctctgaatcacttgttaaattatgtgtggcccaatgtgtttgagacatct
cctcacgtcattcaggcagttatgggtgcactggagggcctaagagttgccattggaccg
tgtagaatgctgcaatattgtttacagggtttgtttcaccctgccaggaaagtcagagat
gtgtattggaagatttataattcaatctatattggctcacaagatgccctgatagcacat
tatccaagaatctacaatgatgaaaagaacacctacattcgttatgaacttgactacatc
ttataa
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