Chrysemys picta (western painted turtle): 101948435
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Entry
101948435 CDS
T04662
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
101948435 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpic00536
]
101948435 (COL3A1)
Glycosaminoglycan binding proteins [BR:
cpic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101948435 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
101948435
NCBI-ProteinID:
XP_005306644
LinkDB
All DBs
Position
Unknown
AA seq
1457 aa
AA seq
DB search
MMSFVQKVTWLILAVFQPSITLAQDGACTHLGQVYADRDVWKPEPCQICVCDSGAVLCDD
IICDDLDISDCPNPEIPFGECCPVCPRVTTTREPTTRTPLNNNVVKGQKGEPGSPGTHGS
PGSPGHPGSPGSPGQPGVCQSCPSINGGSYSPQYDSYDTKTGKGIYQPPGPGLQGPPGPA
GPAGPPGQPGSPGSHGYQGSPGEPGQPGPSGPPGPPGLLGPAGPPGKDGESGRPGRTGER
GLPGPAGHKGPPGMPGFNGMKGHRGFDGRDGAKGDSGAPGLKGENGLPGANGSPGPMGPR
GQPGERGRPGSPGSAGARGNDGTPGTSGQPGPSGPPGTPGFPGPPGAKGEAGTLGSPGSD
GSPGQRGEPGPQGHAGAAGSPGNPGRDGNPGGKGETGPSGIPGAPGLSGARGPPGPPGIN
GPPGQKGMPGEPGKNGAKGEPGARGERGENGIPGASGPPGEEGKKGANGEPGTNGLPGTP
GERGTPGSRGMPGLNGLPGEKGPAGERGSPGTAGPRGAPGESGRDGGPGLPGMRGSTGSP
GSPGHDGKPGPPGNQGESGRPGPPGPSGPRGQPGVMGFPGPKGNEGAPGKNGERGAPGPP
GTQGLPGKSGDVGIPGAPGVAGPPGDKGEAGSPGPSGFQGLPGTAGPPGESGKPGEPGQR
GENGAPGLPGSKGENGLPGERGPQGPQGSPGARGGTGPPGLEGGKGPAGAPGPPGSAGPP
GLQGMPGERGGNGNPGPKGEKGESGGRGSDGFPGKDGPRGPAGPIGPPGPAGPHGDKGEP
GSAGPPGPTGARGGPGDRGEQGPPGPAGFPGAPGQNGEPGGKGERGPGGEKGEPGPAGAA
GPQGGPGAPGPAGSQGAKGERGAPGGPGTSGFPGARGLPGPPGNNGNPGPPGNVGAPGKD
GGPGPAGSTGPAGSPGGAGPKGEPGQPGERGSPGSQGAVGPPGPPGSSGIAGQRGTVGLP
GRPGSSGAPGEPGPKGENGTPGSNGSPGERGAPGLQGPSGQRGPPGESGRDGNPGTDGLP
GRDGSPGAKGDRGENGGPGVPGAPGHPGPPGNIGPAGKTGERGNPGPSGPVGPAGPAGAR
GAPGTQGPRGDKGETGERGSNGIKGHRGFPGNPGSPGPPGALGPQGANGSPGAMGARGPP
GPSGPPGKDGTSGYPGPIGPPGPRGNRGESGSAGSPGNPGPMGPPGLPGAPGPCCGGGDG
IPGDKGQSYFYGDQPSENKINMNDILSSMKSINNQIENIVSPDGSRKNPARNCRDLKFCR
PELNSGEYWIDPNQGCKMDAIKAYCNMETGETCISANPISVPRKNWWTGSGAEKKHIWFG
ESMNGGFQFSYGDPELPEDISDVQMAFLRLLSSRASQNITYHCKNSIAYMDQASGNVKKA
LKLMSSTETELKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPMDI
GGPDQEFGVDIGPVCFL
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtaacttggctcattcttgccgtgtttcaaccctcaatt
actttggcacaagatggagcatgtacacatcttgggcaagtgtacgctgacagggatgtt
tggaaaccagaaccatgccaaatctgtgtgtgcgactcaggagctgttctctgtgatgac
atcatctgtgatgatctggatatatcagactgtcccaacccagagattccatttggagag
tgttgccctgtttgtccacgggtaacaacaactcgtgaaccaactactagaactcctctc
aataataatgttgtcaaaggccaaaagggagagccgggttctcctggaactcatggatca
cctggctcccctggacacccaggcagtcccggctctcctggccagcctggggtctgtcag
tcatgtccctctataaatggaggaagttattctcctcagtatgactcctatgataccaag
actggtaaaggaatatatcaacctcctggtccaggattgcaaggcccacctggcccagct
ggcccagctggcccacctggtcaaccaggctcacccggtagtcatggataccaaggttcc
cctggtgagcctggacaacctggcccttctggacctccaggacccccaggattactaggc
ccagcaggtcccccaggaaaagatggagaatctggaagaccaggcagaactggtgagcgt
ggattacctggaccagcgggccacaaaggaccccctggtatgcctggattcaatggaatg
aaaggtcacagaggctttgatggaagagatggcgccaaaggtgatagtggtgcacctggt
ctgaagggtgaaaatggtcttcctggagcaaatggatcacctgggccaatgggtccaaga
ggtcaacctggtgaaaggggaagaccaggatctcctggttccgctggtgcccgtggtaat
gatggtactccgggaacatctggacaacctggtccctctggccctcccggaactccagga
tttccaggccctccaggtgctaagggtgaagctggtactcttggttccccaggctctgat
ggtagccctggacaaagaggagaacctggtccacaaggtcatgctggtgcagctggttct
cctggcaatcctggaagagatggaaacccaggtggtaaaggtgaaacgggccctagtggt
attcctggtgctcctgggttgagtggagcccgtggccctcctggtccgccaggtattaat
ggacctcctggacaaaaaggcatgccaggtgaacctggtaagaacggtgcaaaaggagag
ccaggcgcacgaggagagcgtggtgaaaatggtattccaggtgccagtggtcctcctggt
gaagaaggcaaaaagggtgctaatggtgagccaggcacaaatgggttacctggaacacca
ggagaaaggggtaccccaggttcccgtggcatgcccggtcttaatggtcttccaggagaa
aagggtcctgctggcgaacgtggtagtccaggcactgcaggtccaagaggagctccagga
gaatctggacgtgatggtggccctggtcttccaggaatgagaggttcgacaggaagtcca
ggaagcccaggccatgatggcaaacccggccctccaggtaatcagggagaatctggccga
cctggccctccaggcccatcaggtccacgaggtcaaccaggagtgatgggtttcccaggt
cctaagggtaatgagggtgcgccaggtaagaatggagaaagaggtgcccctggaccccct
ggcacacagggtcttcctggaaagagtggtgatgtcggcatcccaggtgctccaggagtc
gctggtcctcctggtgacaaaggagaggcgggatctccaggtccatctggcttccaggga
ttacccggtactgcaggcccacctggagagagcggaaagcctggagaaccaggacaaaga
ggtgaaaatggagcccctggactcccgggtagtaagggtgaaaatggtctcccaggtgaa
cgtggtccacaaggtcctcaaggttctcctggagcaagaggtggaacaggtcctcctggc
ctagaaggtggcaagggtcctgctggtgcacctggccctcctggtagtgcagggccacct
ggtttgcaaggaatgccaggagagagaggaggtaatggaaatcctggacccaaaggagag
aagggagagtccggtggcagaggtagtgatggcttccctggtaaagatggaccaaggggt
cctgcaggtcccattgggcccccaggtccagctggcccacatggagataagggagaacct
gggtcagccggaccccctggtcctacaggtgcccgcggtggtcctggtgatcgaggtgaa
caaggcccccctggacctgctggcttccctggagcccccggacaaaatggggaacctggt
ggaaaaggagagagaggccctggtggtgaaaaaggtgagcctggtccagcaggagctgca
ggtcctcaaggaggccctggtgcaccaggtccagctggttcccaaggagcaaaaggagag
cgtggtgctccaggcggccctggtacatctggtttcccaggtgctagaggcctgcctggt
ccccctggtaataatggcaatccagggccacctggtaatgttggagctcctggaaaggat
ggtggtcctggtccagcgggtagcactggtccggctggtagccctggaggtgctggtcct
aaaggtgagcctggccaaccaggtgaaagaggttcaccaggttcacaaggagcagtgggt
ccaccaggtccgccaggctcctcaggtatagctggtcaacgtggtactgtgggactgcca
ggccgtcctggcagttcaggtgctcctggcgaacctggcccaaagggtgaaaatggtaca
ccaggcagcaatggtagcccaggagaacgtggcgctccaggtctacaaggtccttctggt
caaaggggaccacctggagaatctggcagagatggtaaccctggaacagatggcttgcca
ggtcgtgatggatccccaggagccaagggcgatcgtggtgaaaatggtggtccgggtgta
cctggtgcccctggacatcctgggcccccagggaacattggtccagctggaaaaacaggt
gaaagaggaaatccgggtccttctggtcccgttggccctgccggtcctgctggtgctcgt
ggtgctccaggtacccaaggtcctcgtggtgacaaaggtgaaactggtgagcgtggcagc
aatggcattaagggtcatagaggatttcctggtaacccaggttcccctggtccccctggt
gctctgggtccacaaggtgcaaatggaagtcccggagctatgggagcgagaggtccccct
ggcccatctggtcctcccggaaaggatggtacgagtggttacccaggccccataggtcct
ccaggccctcgtggtaatcgaggtgaaagtggctctgcgggttcacctggcaacccaggt
cccatgggtccccctggacttcctggggctcctggtccatgttgtgggggaggtgatggc
atacctggtgacaaaggacaatcatacttctacggagaccagccatctgaaaacaagatc
aatatgaacgacatcttatcttcaatgaaatcaattaacaaccaaatcgaaaacatcgtt
agccctgatggctcccggaagaacccagctcgtaactgcagagacctgaaattctgccgt
cccgaactcaacagcggagagtactggattgatcctaaccaaggttgcaagatggatgct
ataaaagcatactgtaatatggaaactggtgagacatgcatcagtgctaatcccatcagt
gtgccacgtaaaaactggtggaccggttcaggagctgaaaagaaacacatctggtttgga
gagtctatgaatggtggtttccagttcagctatggagatccagagcttccagaagatatt
tcagatgtgcagatggcattccttagattgctctctagccgtgcctctcagaatatcact
tatcactgcaagaacagcattgcttacatggatcaggccagtggaaatgttaagaaagct
ctgaaactgatgagttccactgagaccgagctcaaggctgaaggaaacagcaaatttaca
tacgccgttctggaagatggctgtactaagcacactggagaatggggtaaaacagtcttt
gaatacagaacacgcaagacaatgaggttgcctgtggtggatattgctcccatggatatt
ggtggtcctgatcaggaatttggtgtggacattggcccagtctgtttcttataa
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integrated database retrieval system
