Chrysemys picta (western painted turtle): 101949382
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Entry
101949382 CDS
T04662
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03440
Homologous recombination
cpic03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
101949382 (PALB2)
03460 Fanconi anemia pathway
101949382 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpic03400
]
101949382 (PALB2)
DNA repair and recombination proteins [BR:
cpic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
101949382 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
101949382 (PALB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
WD40_CDC20-Fz
Beta-prop_WDR19_1st
Beta-prop_EML_2
Motif
Other DBs
NCBI-GeneID:
101949382
NCBI-ProteinID:
XP_008163036
UniProt:
A0A8C3F6G4
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All DBs
Position
9:1974404..2001055
Genome browser
AA seq
1338 aa
AA seq
DB search
MRAMDDPPVGKALTWQEKEKLKEKLAFLKREYSKTYNRLQRAQRAERVKNHVKKTVAEQN
RLLRQEETENNTTELMDKQSPNGGNKPGTCRLQTNTCSDSGTEKKMSVTFKLEPEFFNNE
VNLQENSLAESTNSDPENIPSDLMRSVIEENQNQLPRSRMTLVSEGRESACEVPPISAGE
TLDNQMASTEEPGSPVFKGRNTISNTKNKIQKPPRPVIVSEEKGLTPQEPQVGDLQEMPE
ENVFLSVPKPLSYMLMGGNNVQQPVSPCAEDICDSYEPLPQCLVSDIPVSLENIDNTGKE
LACIENQMDREELCRALDLTADNQSSPAGSSNPSISESRPHNERNHNEANSSSPLNTESL
LDDVEEPLGNQEAQTEAGSPVLEKTPPAAESALSSCTMIEGLLFPVEYYVRTTRRMSNCQ
RKVDLEAVILSQLGRSRKGLRSKQKQINSDQLYQETTRSDVQARGTPFPFLGAESDPVSS
SSSQKSLPPSDESSTSNGSLSQKTVISTKQAKGKSWRRGRGRWGSTCRPALNGSQARPET
SDLKVLKENSHLLSNDSQREKENCEGDPERSPICKTRVIVPAAGEAPEAEMIDVMWPTEA
DLPDGSQTFSKCHQPPLEHIQNPLQGNSFLNPWDEAFPSPTRDLEANVNVSQADKQPVGH
IRNQCVQKVCRAEQLPTVKESLPQHDLPTSSVKRKVRQGSKGKRGRSQQMDLEGPTPLGH
LGLDPMAFDPPFRFQNEMLSVKWLPSKLDIKDFQLPDEEFGLLKFEKLQSGTVKQLEPFV
PSGSEHWLQSAGDTVTLGDTRLKQVNTEGKSLENSFISPSKTMSPKQPHLEGQLHKKGLS
PRELLLTPASTVSAGAINQLESQIHTPAFPVLGATPAILSLVHNETLPDTLSVLPLQVKT
NLFKEPASHVVDGRECNNSTGALHSDSCRPGFDCRFDEAVTLKEYQQPGNGSKECCSAEN
KLTAEQLAVALSDNLRDRSLQLASKLKNPSSSCAVDVSTVWWESAGCTELCIVTACETSI
SLWKPLASNQWSKVYTWHLTEIPVIQIVPLPDVCNLVCVALGDLEIGEIRLLLWSSEDGS
LKQSLVKTGNIKAVLGLTNRRLVSSSGTLQDQQIEIISVSEAGRSNERQTLMPPEETILA
FAEVEGIRDALVGTTGVNSLVVWNLKTGQILKKMHVGYSYPASICHRVYSDSGLLFVVLS
HPHAKENESCGNPAFRMRVFNPKTARSTGVMFFSLPPGHSGRYLEGEVKGVSAAAVLTSG
AIAVWDLFSGQCTALLPPNKDGNWSLVRWSVTDSCLLAGQKDGSVYVYHYSQAKAVGKSM
GNTMDSETNRRICTDNLK
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgccatggacgacccccccgtgggaaaggcgcttacctggcaagagaaggaaaag
ctgaaagaaaagttagccttcctgaaaagagaatacagcaaaacatacaacaggttacag
cgtgcacaaagagctgagagggttaaaaatcatgttaagaaaacggttgcagaacaaaat
cgattgcttaggcaagaggaaacggagaataataccacagaactgatggataaacagtct
cccaatggtggcaataaacctggaacatgtcggttacagaccaatacctgttctgactca
ggcactgagaaaaaaatgtctgtcacgtttaaacttgagcctgaattcttcaacaatgaa
gttaacttgcaggaaaattcattggcagaaagcacaaatagtgacccagaaaatatcccc
tctgacctcatgagatctgttattgaggagaaccaaaaccaactgccaaggagtagaatg
actttggtctcagaggggagagaatcagcttgtgaagtgccaccaatcagtgctggggaa
acgttggacaatcaaatggccagtacagaggagcctgggtcaccagtattcaaggggagg
aacaccatctcaaacaccaagaataaaattcagaagccccccaggccggtcattgtgagc
gaagaaaaaggtttaacgcctcaagagccacaggtaggagacttgcaggaaatgcctgaa
gagaatgtatttctgagtgtccccaaaccactttcatacatgttgatgggtggcaataac
gttcagcagcctgtctctccatgtgctgaggacatctgtgatagctatgagccactgccc
cagtgtttagtgagtgatatccctgtttcactggaaaacattgacaatacaggaaaagaa
cttgcctgtatagaaaaccaaatggatcgggaagagttgtgtagggccttggatttaacc
gcagataatcaatcatccccggcaggcagtagcaaccctagcattagtgaaagcagaccc
cataacgaaagaaaccacaatgaggccaatagctcaagtcctctgaacactgagtctctt
ctggatgatgttgaagaacctttggggaatcaagaggctcagactgaagcagggtctcct
gtcctagagaagactcctcctgcagcagaaagcgcactgagctcttgcacaatgattgaa
ggacttctctttcctgtagaatattatgttaggacaactcggcgtatgtctaattgccag
aggaaagtagacctggaggctgtcattctcagccagttgggcaggagcaggaaagggctg
cgaagtaaacaaaagcagataaattcagatcagctctaccaagaaaccaccagaagtgat
gtgcaggcaagaggcactcccttcccttttctaggtgcagagagtgacccagtgagttca
agtagttctcagaaatctctccctccatcagatgagagcagcacctccaatggttctctt
tctcagaagactgttattagtacgaaacaagctaagggaaaatcctggaggagaggaagg
ggcagatggggttctacctgcagacctgcactgaatgggtcacaagcacgtcctgagact
tcagatctcaaagtgctaaaggaaaacagtcatctcttgtcaaatgattctcaacgtgaa
aaggaaaactgtgagggtgaccctgagaggtcacctatatgcaaaacaagggtgattgtc
cctgcagctggtgaggctccagaagcggaaatgatagacgttatgtggccaactgaggct
gatcttcctgatggaagccaaacattcagcaaatgccatcagcctccattagaacatatt
caaaatccactccaaggaaatagtttcttaaatccatgggatgaagctttccccagcccc
acacgagatctggaagccaatgtaaacgtgagtcaggctgataaacagccagtgggacac
attaggaatcagtgtgtgcagaaagtctgcagggctgagcagctgccaacagttaaagaa
tctctacctcagcacgatctcccaacttcttctgtgaaacgtaaagtgaggcaaggatct
aaaggtaaaagagggcgcagtcaacagatggacttggaaggtccaactcctctaggccat
cttggtctggatcctatggccttcgatcctccctttcgcttccagaatgagatgctcagt
gtcaagtggctgccctcgaagctggacatcaaagactttcagttacctgatgaggagttt
ggtctccttaaatttgagaaactacaatccggcacagtgaaacagctggagccctttgtt
ccttcagggtctgaacactggctccagagtgctggagacactgtgactttaggggacacg
agacttaaacaagtgaatacagaagggaagagtctagaaaatagctttatttctccttca
aagactatgtcacctaaacagcctcacttagaagggcagttgcacaagaaggggctttct
ccaagggaattgctgctaactccggcaagtactgtctcagctggtgcaatcaaccagctt
gaatcacagattcacacacctgctttccctgtcctgggtgcaaccccagctatcctgtca
ctggtacacaatgagaccttacctgacacactttctgtacttcctttgcaagtgaaaacg
aatctcttcaaagaaccagccagtcatgtcgtggatgggagggagtgtaataactccaca
ggtgcattgcactcagatagctgcagaccaggatttgactgtaggtttgatgaagctgtc
accctcaaagagtatcagcaaccagggaacggttccaaggagtgctgcagtgcagagaac
aaactgacagcagagcagttggccgtggcactgagtgacaacctgagagacaggagcttg
caactggcctcaaagctaaagaacccctcaagttcttgtgctgtggacgtgagcactgtc
tggtgggaatcagctggctgcacagagctgtgtatcgtaactgcttgtgagacttccatt
tccctgtggaaacctctggcttccaaccagtggagcaaggtgtacacctggcaccttaca
gagattccagtaatacaaattgttcccttgccagatgtctgtaatcttgtgtgtgttgcc
ttgggagatctggagattggagaaataaggctcttgctttggtcttctgaagacggctcc
ttaaagcagtccctagtgaaaaccgggaacataaaagctgttcttggtctgacaaacagg
aggctggtcagtagtagtgggacacttcaagaccagcaaatcgagataatctcagtttcg
gaggcaggaagaagcaatgagaggcagactttgatgcccccagaagaaaccattctggct
tttgctgaggtagaagggattagagacgctttggttggcacaactggagtgaacagcctt
gttgtttggaacttgaaaactggccagattctgaaaaagatgcacgttggttattcctat
cctgcttcaatctgccatcgcgtctattctgactctggcctcctgtttgttgttttaagt
cacccacatgccaaagagaatgagtcctgtggaaaccctgcattccggatgagagtgttc
aatcccaaaacagccagaagtactggggtaatgttcttctccctcccccctggacacagc
ggaaggtacctggaaggcgaagtgaagggtgtctctgcagcagctgtgctaacatctgga
gcaattgcagtgtgggacttattttcaggccaatgtactgctctacttccaccaaacaag
gatgggaattggtctttggtcaggtggtcagtcacagattcctgtctcctggctggacag
aaagacggaagcgtgtatgtgtaccattattcacaagccaaggcagtagggaagtcaatg
ggtaatacgatggattctgaaacgaacaggagaatttgcactgataatctaaagtaa
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integrated database retrieval system
