Chrysemys picta (western painted turtle): 101950205
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Entry
101950205 CDS
T04662
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
cpic
Chrysemys picta (western painted turtle)
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpic03021
]
101950205 (SETX)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101950205 (SETX)
5.6.2.5 RNA 5'-3' helicase
101950205 (SETX)
Transcription machinery [BR:
cpic03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101950205 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_22
AAA_16
SLFN-g3_helicase
NAT10_TcmA_helicase
nSTAND3
WavE
Motif
Other DBs
NCBI-GeneID:
101950205
NCBI-ProteinID:
XP_005293350
UniProt:
A0A8C3I9H2
LinkDB
All DBs
Position
20:complement(6239617..6286294)
Genome browser
AA seq
2862 aa
AA seq
DB search
MSTCRWCTPGGSSTTQFLRTYASKTLSPEDRAAANDDLCYCLECVVEYHKARDELPGLLQ
EILWELETSRLIDHFEKSMKTDIEEDDELFIVDDNGETKLSGYTGPDFENHLRVPLLEIL
KYPYLLLHARISELCVEALCKMEQVNFSFQVFDKHPGIYLLLVHPNEVIRRWAILTARNL
GKVDRDDYYDLQEVLTCLFKVIELGLFDSPDIYSSSMIEKGKLILLPSHLYDTTNYKNYW
LGICMLLTVLEEQAMDSLLLGPDKQNDFMQSILHTMEKQTDDESIDPFWPALHCFMVILD
QLGSKVWGQLIDPVQAFQTIINNVSYNNEIKNIRNSSRRTKSEPESNYEEEMVSCSQIVY
NYNTEKPKKDTGWKTAICPDYCPNMYEDMQTLANVLQSDIGQDMRVHNSTFLWFIPFVQS
LMDLKDLGVAYIVEVIHHLCSEIKGFLSERVQQCDKVSEFFILILVSVVELHRNKKCLHL
LWISSQEWVEAVVKCANLPTIAFTRCSEKAPGNCPKVTSAISSQASNSVQHACVQLIRSL
LREGYQLGQQTVCKQFLDKLNLLLRGNLPLGWQLKNRETQELQMCLKQVIRSIKDRSSNA
SIPVENSVICTNLSTIPIKQEKGTASDKCQMNIQHGDSLSPPFSLASGSDEACQESSSPR
RRGIGEEEYTEMSFNNRKLCVTAECLLTDIKKEPHDRSFQECEHPDSSGATKIHKNTHKN
GNNYQVQGNQNKNNSLLKQCFNTSPQVSDFKSHAILERDETEVRMPECLSAQSCSSSHED
THSSNGKDGNGSPNSCSKFKIDPNKITNLKTQNADWTTKLLQLMKQSASNSEIDQQQSHS
ESLCASKDGSRDQEVNILSEGETSVNFNTSNGSENKQENSMNSTFQIKLLSLKQESNDTK
ADYSNSFKKEAGLEESESGDEDDNIPLATFKRYLKKKRSFSRRSSSLPKPLLNKDLNTEI
PDQGQSNSGSLCPKRSDLKDQKVSMQRTDETSANFNIPSSSENKGEVPRNAPLISPLLIK
HESTDRLLDFSRYYKGEGDSEEKINIEDNAEIAGDLVKKKSGASPLTDSQIDRDLDKLSL
AAYAKGVNFPVASSQEHSIHRCDIKRKVKGAVRSSTKDQSNESSSDTDCPNNEVIVISDS
SSDEEKKLGIKKPGKKEVCVCPEKQPLTSGYVSDSANKKEQLKTHSSPLPCEEHNSQFFE
FETEDDVFSVWQDSQINDEEVNQAQEQDSNLTSTSTPDSFELADRINDWGYDTDYISDDV
IEKAEEIVERQVDSLSHKKVSKTGTKSEAPFQEPAIKGNATAQSENFTQPDAVAKDHAKN
TGLMEPRASTSSVSLASKLTIKKSTLSPGKSLAKSKIVRTALRSPRKMSLKTVQNKKPAQ
TSSRNTELRRSTPAVVPPKKVRQCPEPTLTVEKLGLKKAPRKAFELSQRSLDSLAELRSY
GKAAGAVQTPQKQKTKLIAPQNLVIKHNRKMLACQDLQFLRQIRPTQVGRGKNQVGSSED
RSKKITKKSDPRHPIQQPVAFDPVSAAGTSEKQKERRAEQICYPSSNGGKKVRKSFSSER
EEVQTTHMDKMTPHASKESNMKIEENNMAGPALQIESCFSSSLTGDYKNEPAEREYVVPL
VSPSTPHFEGASLKESKPTLNENSDEDDLFLTQLDPVDMEMCSQMENIGDIIIASEKEPL
DTKVDAAESLLQNEPLGIVKCKYKDCTEQVEKAGEYCSKHSATSASDHLFIKPSLPPPKP
EKPSTTKHFSSNSSSRSDILTKDFENNSKRSLPSKAKSKVVKSSVSKTGNPKAVSSENQI
FKIPSFSSSLQSQSSSNVLRPQNMQTNSTSRFPNRSASGAHSGQERGLPSFPQANALVTQ
QRDHSIFVTEVLKWNYEMFVNLSQFGLPYNLQSIMVSVPVKFHGYNDYFNTFFPLMMLNA
FETVAQEWIQNQKTREKNSYHLHLQNFCADLNRADFTACIRESDLAKQLHPKEDDLIFLV
VPEKQNTFAEESEMESHLVYHVGFVTRFSRASLRETRQNEQHVVCHLSVQTRGNLSYYIN
QPVKCVVVSSLVTTQRRFKGLLLLSRSPLAKPIINPSYADFCPRDLNVTSESTSFYMRDY
NADQKKAIETAYAMVKEHPSLPRICLIHGPPGTGKSKTIVGLLYRILTERSGNEKRAQNL
NAKIKRNRILVCAPSNAAVDELMKKIILEFKEKCQDRKNPLGNCGDINLVRLGPEKSISI
DVLKFSLDSQVSHRMNRGQPGRDQDIHRKKEILDCQLDILSRQRAMDRCDKRQQSQRLDE
EIARLSRERQQLTSQLKKVGGRPKEVQASIILESHIICCTLSTSGGFLLESAFHRQGHDP
FSCVIVDEAGQSCEVETLIPLIHRCSKLVLVGDPKQLPPTVISMKAQEYGYDQSLMARLH
KHLEEQMQQCVIGKLPVVQLTIQYRMHPDICLFPSNYIYGRTLKTDRATEENRCSSDWLF
QPYLVFDVADGHEKRDNDSFANPQEVKLVMEIMKLIKEKKNDFGFRHIGIITPYSAQKKM
IQQELDREFGRGRAGEVDTVDGFQGRQKDCIIVTCVRANSTQGSIGFLASLQRLNVTITR
ARYSLFILGRLTTLMENKDWNKLIQDAQRRGAIIKTCDKNYKKDTVKILKLKPALQRPLS
YPPTAALSEKATQVQACLGSDGKNKVTNRKSSDDSRRLSASAGLSAQGSGVVRQPAESQV
LGSKGVTLPTAVQPAVRERPRDPRLARRTEATGKEQASKNSSPSALSNPDVTLSRGPDAS
SAHWGQISTVPPPVSKAEDLNKTNQTVRQPDMPFTASHTARQDHDWRVSVSSKEARTVSK
EDQKGNEWTKDKDYRTPASRRASEQPPENKDLSEAKKRKVSY
NT seq
8589 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgttggtgtacgcctggtggttcctccaccacccagttcctaagaact
tatgcttccaagactttgtcccctgaagatcgtgcagcagccaatgatgatctgtgttac
tgcctggaatgtgtggttgaatatcacaaggcaagggatgaattgcctggcttactgcag
gagatcttatgggagttggaaacctcccgtctcattgaccactttgagaaatccatgaag
acagatattgaagaggatgatgaattatttatagtggatgacaatggggaaactaaactg
tctggttacacaggcccagattttgagaaccacctgcgtgtacctcttctagaaatactg
aaatacccgtacctgctgctacatgcacgaatcagtgagctctgtgttgaggctctttgt
aaaatggaacaagttaacttctcctttcaggtctttgacaaacatccaggcatttatctg
ttgttggtacaccccaatgaagtgattcgtcgatgggccatcctgacagcaagaaattta
gggaaagtcgacagggatgattactatgacttacaggaagtgttgacttgcttgtttaaa
gtcattgagttgggactgtttgacagtcctgatatttatagttcttcaatgattgagaag
gggaaactcattcttctgccatcccatttgtatgataccaccaactacaaaaactactgg
cttggtatctgtatgttgctaacagtgctggaggaacaagctatggattctttgttgctg
ggtccagataaacagaatgatttcatgcagtctatacttcacaccatggagaaacaaaca
gatgatgaaagcattgatcccttctggccagcgctgcactgtttcatggtgattttggat
cagctcgggtctaaagtgtggggtcaactcatcgatccagtccaggcctttcaaaccatt
atcaacaatgtcagctacaacaatgaaataaaaaatatacgcaatagttcaaggaggact
aaatctgaaccagagtcaaactatgaggaggaaatggtttcttgcagccagattgtgtat
aattacaatacagaaaagcccaaaaaggatactggatggaagacagccatttgtccagat
tattgccccaacatgtatgaagatatgcagacattggctaatgtgcttcaatcagatatt
ggccaagatatgcgtgtccataatagcacatttctatggtttattccttttgttcagtcc
ctaatggacctcaaggacttgggcgtggcttatatagtagaggtcattcaccatctgtgc
tcggaaatcaaaggctttctcagtgaaagagtccagcaatgtgacaaagtttctgaattt
ttcatcctgattctggtgtcagttgttgaactacacagaaataaaaagtgccttcatttg
ctgtggattagctctcaggaatgggtggaagcagtagtgaaatgtgctaaccttccaacc
atagcatttacgcgctgctctgaaaaagcacctggaaactgtcctaaagttacatcagca
atatcttcacaggcttctaactctgtacagcatgcttgcgtgcagttgatacgcagcctt
cttcgagaaggctaccagttagggcaacaaactgtttgcaagcagtttctagataaactc
aatctgcttttgcggggaaatttacctctgggttggcagctgaagaaccgggaaactcag
gaattgcaaatgtgtttaaagcaggtaataagaagtataaaggacagatcatcaaatgct
tccatacctgtggaaaatagcgtgatttgtacaaatttgtccaccattcctataaagcaa
gaaaaagggacagccagtgataagtgtcagatgaatatacaacacggagatagcctcagt
cccccattttctttagcatctgggagcgatgaggcttgtcaagagagttcttcccctaga
agaagaggcatcggggaagaggaatatacggaaatgtcttttaacaatagaaaattatgt
gtaactgcagaatgccttttgacagatattaaaaaagaacctcatgataggtcatttcag
gaatgtgaacatcccgatagctctggagcaacaaaaatacacaagaatacccataaaaat
ggaaacaactaccaagtgcaggggaaccaaaataagaataactccttacttaaacagtgc
ttcaatacaagtcctcaagtctctgatttcaaaagtcatgctatattggaaagagacgaa
acagaagtgaggatgccagagtgtctgagtgctcagtcttgttccagttctcatgaagac
actcacagctcaaatggaaaagatggaaatggctcccctaattcctgttcaaagtttaag
atagatcctaataaaatcacaaatttgaaaacccagaatgctgattggaccacaaaacta
ctacagttaatgaagcaatccgcttcaaattcagaaatagaccaacaacagtctcactcc
gagtctctctgtgcaagtaaagatggcagcagagatcaggaagtgaatattttgagtgaa
ggtgaaacctcagttaactttaatacttcaaatggttctgaaaataaacaggagaacagc
atgaacagtacttttcaaatcaagctgctctctcttaagcaggaatcaaatgataccaag
gcagattattcaaattcctttaaaaaagaggctggcttggaagaaagtgaaagtggcgat
gaagacgacaatattccacttgctacgtttaaacgttatttaaagaaaaagagatccttt
tcaagaagatcgagttctttgccaaagcctttactgaataaagaccttaacacggagata
ccagatcaagggcagtctaattctggcagtttatgcccaaagagaagtgacctcaaagat
caaaaagtgagcatgcaacgtacggatgaaacttcagcaaattttaacattccatctagt
tctgaaaataaaggggaggtacctaggaatgctcctctaatcagtccgctcttgattaag
cacgaatcaactgacagactgttagatttttcaagatattataaaggagaaggtgattca
gaggaaaaaataaatattgaagataatgcagaaattgcaggtgatttggtaaaaaagaaa
tctggagctagccccttaacagactctcagattgatagagaccttgataaattatcctta
gctgcttatgccaaaggtgtcaattttcctgttgcttcaagccaagaacactcaatacat
cggtgtgacattaaaaggaaagtaaaaggtgctgttagatcatccacaaaggaccaaagt
aatgagtcctcttctgatacagattgtcccaacaatgaagtcattgtcatttcagattcc
tcttctgatgaggaaaaaaagttgggtattaagaagccaggaaaaaaagaggtgtgtgta
tgtccagaaaaacaacctttaacatctggctatgtttctgatagtgcaaacaaaaaagag
caattgaagactcatagctccccgttgccgtgtgaggaacataattctcagttttttgag
tttgaaactgaagatgatgtcttttcagtctggcaagattctcagataaacgatgaagaa
gtgaatcaggcacaggaacaagactctaacttgacatcaacaagtactccagatagtttt
gagttggcagatcgtataaatgactggggttatgatacagattacatcagtgatgatgtc
attgaaaaagcagaagagattgttgaaaggcaggtagattctctctctcataagaaagtt
agtaaaactggcacaaaatctgaggcaccttttcaagagcctgctatcaagggaaatgca
actgctcagtctgagaattttactcagccagatgctgttgctaaagaccatgccaaaaac
acaggcttgatggagcccagagcatctacatctagtgtatcattagcttcaaagttgact
attaaaaaaagcactttaagcccaggcaaaagtttagcaaaatccaagattgtaagaact
gctcttagaagtcccagaaaaatgagccttaaaactgtacaaaacaaaaaacctgctcaa
actagttctagaaatactgagcttcgcaggtcaacccctgctgtagttcctccaaagaaa
gttcgccaatgtcctgagccaactttaactgtggaaaaacttggcctaaaaaaggccccc
cgcaaagcatttgagttatcccagcgatccttagatagtctggctgaattgcgcagctat
gggaaagctgctggggcagttcagactccacagaaacaaaaaactaaattaattgctcca
cagaatctagttataaaacataatagaaaaatgttagcctgccaagatcttcagttttta
aggcagataagacccacacaagtggggagagggaaaaatcaggtaggaagttctgaggac
agaagcaaaaaaataactaaaaagtctgatccaaggcatcctatacaacagcctgtggct
tttgacccagtatctgctgcaggaactagtgaaaaacaaaaagagaggagagcagagcag
atatgctatccctcaagcaatggtggaaaaaaggtgagaaaaagcttctcatctgagaga
gaggaagtccaaaccacacatatggataaaatgacgccacatgcttctaaggaatctaac
atgaaaatagaagaaaacaatatggcaggtcctgcattacagatcgaatcatgtttttct
tcatctttaactggagactacaaaaatgaacctgcagagagagaatatgttgtccctctg
gtttccccatctacgcctcactttgagggggcatctctgaaagagagcaagcctacatta
aatgaaaacagtgatgaagatgatttatttttaactcagttagatcctgtggatatggaa
atgtgttcacagatggaaaatattggcgatattataatagctagtgaaaaagagccacta
gacacgaaagttgatgctgctgaaagtctgctgcagaatgagcccttaggtattgtgaag
tgtaaatacaaagattgtacagaacaggtggaaaaggcaggggagtactgtagtaagcat
tctgccaccagtgcttcagatcatctctttatcaagccaagtttaccaccacctaagcct
gaaaaaccttccactactaaacatttcagctcaaatagctcttcacggagtgacatcctc
accaaggattttgaaaataattcaaagcgctcattgccgtcaaaagccaagtcaaaagtg
gtaaaatccagtgtctccaagacagggaatccaaaagctgtatcatcagagaaccagata
ttcaagatcccaagtttcagcagtagtcttcagtcccagagttccagcaatgttctccgg
ccccagaacatgcagacaaacagtacttcacgttttcccaacaggtctgcctcgggggct
cattcagggcaagaaagaggtctcccttcctttccacaagcaaatgctcttgtcactcaa
cagcgtgatcatagtatttttgttacagaggtcctgaaatggaactatgaaatgtttgtc
aacttgagccagtttggacttccatataatcttcaatccattatggtctctgttcctgtc
aaatttcatggatacaatgactattttaatacatttttccccttgatgatgctaaacgcc
tttgaaacagttgcacaggaatggatacaaaaccagaaaacgagagagaaaaatagttat
catttgcacttacaaaatttctgtgctgacttgaatcgagcagattttacagcatgcatt
cgggaaagtgatctggcaaaacagcttcatccaaaggaggacgacttgatctttttggtg
gtgcctgaaaaacaaaacacctttgcagaagaaagcgagatggagagccatctagtgtat
catgttggttttgtgacccgcttctcccgtgcatcactccgtgaaacaaggcaaaatgag
cagcatgttgtctgtcacctttccgtccaaactcgaggcaatttgtcatactacataaac
cagccagtgaaatgtgtagtggtcagctctctagtgactacacaacgaaggttcaaaggt
ctgctactgttgagcaggagtcctctggctaaacccatcataaatccaagttacgctgac
ttctgtcccagggatttgaatgtaacttccgagagcactagtttctacatgagagactac
aatgcagatcagaagaaggctattgaaactgcttatgctatggtgaaggagcatccaagt
cttcccagaatctgcctgattcatgggccacctgggacagggaaatcaaaaactattgtt
ggactcctgtaccgtattctgacagagaggtctgggaatgagaaacgagctcaaaacttg
aatgccaagatcaagcgaaaccgtattctggtttgtgcaccatccaatgctgctgttgat
gaactcatgaaaaagataatcctggaattcaaagaaaaatgccaagacagaaaaaatcct
ttgggaaattgtggagatataaacttagtgcgactaggtccagaaaagtcaataagcatt
gatgtcctgaaattcagcctggacagccaagttagccacagaatgaaccggggacaacct
ggccgtgaccaggatattcacaggaaaaaggaaatcctggattgccagctggacattctc
tctcggcagcgtgccatggatagatgtgataagaggcagcagagtcaaaggttagatgag
gaaattgccagactttcaagggagcggcaacaactcacttcccaactgaagaaggtcgga
gggcgccctaaggaagtgcaggctagcatcatcttggagtcccacatcatctgttgcaca
ttgagcacaagcggaggctttctgctggagtctgcttttcaccggcaaggacatgaccct
ttcagctgtgtcattgtggatgaggcggggcagtcatgtgaggttgaaactctaattcca
ctgattcatcgctgtagtaaacttgtccttgttggagatcccaagcagctcccccctact
gtaatatctatgaaagctcaagagtatggctatgatcagtctctgatggctcgcctgcac
aaacacctggaggaacagatgcaacagtgtgttatagggaagctgccagttgtgcagctg
actatacaatataggatgcatcctgacatctgtctcttcccatccaattacatttatggc
aggactttaaagactgacagagcaacagaagagaacagatgttcttcagattggctattc
cagccatacctggtctttgatgtagcagatggccacgaaaaacgggataatgactctttt
gctaatccccaggaagtgaagctggtgatggaaataatgaaattgattaaagaaaaaaag
aatgattttggttttcgtcacataggaataattaccccttacagtgcacagaaaaagatg
attcagcaagagctggacagagagtttggaaggggcagggcgggggaagtagacacagtt
gacgggttccagggtcgacagaaagactgcattatagtgacgtgtgtaagagcgaacagc
acacaagggtcaattgggtttctggcaagtcttcagcgtctgaatgttacaattactcga
gcaaggtacagcctcttcatccttggaagactgacaacgttaatggaaaataaagactgg
aataagctgattcaggatgctcagagaagaggcgctatcatcaagacttgtgacaaaaac
tataaaaaggatactgttaaaattctgaagctcaaaccagcattacagcggccactctcc
tatcctcctactgctgcactgtcagagaaagctactcaagtgcaggcgtgtttgggcagc
gatgggaagaataaggtcaccaacagaaaaagcagcgatgactctagaagactctctgcc
agtgctggcctgtcagcacaaggcagtggagtagtccgacagcccgcagagtctcaagtt
ttgggttctaaaggagtcactcttcccacagcggtgcagcctgctgttcgagagagacct
cgggatccaagactggctaggaggacagaagcgacagggaaggagcaggcctccaagaat
agcagtccatcagccctgagcaatccagatgtgacattgtcacggggacctgatgcatct
tcagcccactggggtcagatcagcactgtgccgcctcctgtctccaaggcagaagatttg
aacaagaccaaccaaactgtaagacagccagacatgcctttcactgcttcccatacagcc
aggcaggaccatgactggagagtttctgtctcatcaaaagaggcaagaactgtcagtaaa
gaagaccagaaaggtaatgagtggaccaaagacaaggactatcggacccctgcaagcaga
agagcatcggaacaacccccggagaacaaagacttgagtgaggccaagaagaggaaggtc
tcctattag
DBGET
integrated database retrieval system
