Chrysemys picta (western painted turtle): 101950630
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Entry
101950630 CDS
T04662
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101950630 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
101950630 (PATL1)
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101950630 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
101950630 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
101950630
NCBI-ProteinID:
XP_008176555
LinkDB
All DBs
Position
4:complement(25624183..25645493)
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AA seq
815 aa
AA seq
DB search
MGGADLWDDVMYVFRDGEACVSRGGGSEPERGPRGASLAVGVSAPRTMFRYQSLEDCPLD
EDAFQTLGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKPATARELEDGAVSDEM
DLLGHHEENLAERLSKLVIENELEDPAIMQAVQTQPPMQQPGGLNSSIWDGSAVLRRIRG
PLLTQEMPSVSVLEYAMPQRPLQGQEDERDLSERALPRRSSSPVIGSPPVRAVPIGTPPK
QAAVPNFNQQILCPKPVHIRAPMQQRYPSPYGERMSPNQLCNVPNSSLLGHPFPPSVTPV
FTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLTSMNPKLLQGRVGQMMSPASGFRAFF
GAPPPSAPPPSQQQQHPPCPGSHLQNLRPHPQMFRPDTTHLHPQHRRLLHQRQQQNRNQH
RSLNGSAGDRAGHRSSQQEQLRKDPYANLMLQREKDWVSKIQMMQLQSTDPYLDDFYYQN
YFQKLEKVSAAEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSVNNPRK
MIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYLLSLEGERPALM
EERKQKICDMYDNLRGKTPGQERPSDDHFVQIMCIRKGKRMVARILPFLSMEQAADILMA
TARNLPFLIKKDAQDEVLLCLLRPFSLVLYHLPSGTVTSLLQQLANLPQSVTAPAPANLH
LAAVLQNKFGLSLLYLVLSRGEELQNSNAGTELMQDNQWTELMSMTTRELLRIPEAALAK
PVSTPSNLLSLFSRYVDQQKLNVLETKLQLVQGIR
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgggaggggcggacttgtgggatgacgtcatgtacgtgttccgtgacggcgaagcgtgc
gtatcgaggggcgggggctcggagccggagcggggtccgcgcggggcctccctggcggtg
ggagtctccgcgccgcgcaccatgttccgctaccagtccctggaggactgtcctctggat
gaagatgcctttcagaccctgggtgaggaggatgaagatatcgaccagttcaatgatgac
acgtttggagccggtgctgttgatgatgactggcaggaggcacatgaacggcttgcagaa
ctggaagacaagcctgcgacagctagagagctggaagatggggcggtcagtgatgagatg
gacctgctggggcaccatgaggagaacctggccgagaggctgagcaagctggtcattgag
aacgagttggaagatccagccatcatgcaggctgtgcaaacccagcctccaatgcagcag
ccaggaggcctcaactccagcatctgggatggatccgcagttctgaggcgcatccgagga
ccacttctcactcaggagatgccctcggtgtctgtgctggaatatgctatgcctcagaga
cccctgcagggccaggaggatgagcgggacctctcggagcgggcactgcccaggcgctcg
tcctccccagtcattgggagcccccctgtcagggctgtccccatcggcaccccaccaaag
caggctgccgtgcccaacttcaaccagcagatcctgtgtccaaagcctgttcacatccgg
gccccgatgcaacagcgttatccttccccctacggcgagaggatgtccccaaaccagctc
tgcaatgtcccgaactcttccctcctgggccacccgttccctcccagcgtcactcccgtt
ttcacccaccttcagagagcgcagcttctaggaggagcacaggctggacgaatgtctcct
agccagtttgctcgtgtctctggactcgttggcagccccctcacatccatgaaccccaag
ttgcttcaaggcagagttgggcagatgatgtctccagccagtgggttccgtgcctttttt
ggggcgccaccaccttccgcgccacccccatcccagcagcagcagcaccccccatgtcct
gggtcccacttgcagaacctaaggcctcacccgcagatgttcagaccagatacaactcac
cttcacccgcagcatcggcggctcttacatcagagacagcagcagaacaggaaccagcac
cggagtttgaatggctcagcaggggaccgagctggccaccggagcagccagcaggagcag
ctgcggaaggacccctatgccaatctcatgttgcagcgggaaaaggactgggtatcaaag
atccagatgatgcagttgcaaagcactgacccttacctggatgacttctactatcagaat
tacttccagaagctggagaaagtgtcagcggcagaggagatgcacggcgatggccccaag
aaagaacgtactaaactcatcacaccccaggtggccaagttagagcatgcctacaagcca
gtgcagtttgagggctcgctggggaagctcacagtctccagtgtaaataacccccggaaa
atgattgatgcggtggtgacctcccgcagcgaggacgatgagacgaaggagaagcaggtt
cgagacaagagacgtcagaccctcgtcaccattgagaagacgtacagtctcctcctggat
gtggaggactacgagaggcgctacctcctgagcctggagggggagcggccggccctgatg
gaggagagaaagcagaagatctgtgacatgtatgacaatctgagggggaaaacacccggc
caagagaggccaagtgatgaccactttgtgcaaatcatgtgtatccggaaagggaagcgt
atggttgcccggatcctgccttttctgtccatggagcaagcggctgacatactcatggca
acagccagaaatctgcccttcctgatcaagaaggatgctcaggatgaggtgctgctgtgc
ctgttgaggcccttctctctcgttctctatcatcttccgtcggggacagtcaccagcctt
ctgcagcagctagcgaacctacctcagagcgtcacggcgccagcacctgccaacctgcac
ctcgcagctgtgctccagaacaagtttggcctgtccctgctgtacttggtcctgagtcgt
ggggaggaattgcagaattccaatgctggtacggagctaatgcaggacaaccagtggaca
gagctgatgtccatgacaacccgagagcttctgcggatccccgaagcagcgctggcaaag
ccagtatccaccccttctaatctgctgtcccttttttctcgctatgttgatcagcagaag
ctgaacgtgctggagacaaagttgcagttagtgcaggggatacggtag
DBGET
integrated database retrieval system
