Chrysemys picta (western painted turtle): 101951592
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Entry
101951592 CDS
T04662
Symbol
COL4A5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic04510
Focal adhesion
cpic04512
ECM-receptor interaction
cpic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101951592 (COL4A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101951592 (COL4A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101951592 (COL4A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpic04147
]
101951592 (COL4A5)
00536 Glycosaminoglycan binding proteins [BR:
cpic00536
]
101951592 (COL4A5)
Exosome [BR:
cpic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101951592 (COL4A5)
Glycosaminoglycan binding proteins [BR:
cpic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101951592 (COL4A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101951592
NCBI-ProteinID:
XP_008168268
LinkDB
All DBs
Position
8:complement(40890119..41031773)
Genome browser
AA seq
1688 aa
AA seq
DB search
MKLRGCRRLAAACLVLLGLWGLSAEAAACHGCASGSKCDCSGVKGEKGERGFPGLGGQPG
LPGFPGPEGPPGPRGIKGDDGLPGPTGPKGIRGPPGLPGFPGTPGLPGLPGQDGPPGLQG
IPGCNGTKGERGFPGSPGFPGLQGPPGPPGLPGMKGDPGEIILSSLPGQKGDPGFPGLPG
LQGPPGPLGAQGPIGPPGPPGLTGPPGPKGVPGPKGNMGLNFQGPKGEKGDQGLQGPPGP
PGQIGEQKRPNDVEFQKGDQGIPGERGPPGPPGPEGPPGPSGGMKGEKGEQGEPGKRGKP
GKDGDPGQPGRDGLPGDPGLNGVPGRDGEKGMKGERGLPGPPGVITGNGAEVGPKGSKGL
PGFPGPKGERGYPGLTGPPGLSGPPGITGIGPPGPPGLPGERGQKGIQGLPGVSIPGQPG
LDGRPGPPGPPGAPGPPGTTIPPSDRVCQRGPPGFPGLPGEKGFMGEQGQKGDKGETCFN
CIGTGISGPPGDRGPPGPPGSPGSPGFPGPKGEKGLTGLTGLVGPPGFPGPPGAPGFPGS
KGDPGDSLAFPGLKGDKGDTGFPGSPGLPGIDGSPGREGLPGLPGPKGEPGGVAFKGGMG
PPGDPGVPGLPGDRGPMGPPGFGPQGPQGEKGIQGVSGRPGPPGVPGPKGEPGETITEPG
VPGSPGPPGRNGEVGLPGDPGLPGQPGLPGISGPKGDPGIPGIGLPGPPGLKGFPGMAGP
PGAPGAPGRPGFEGPPGQSGFPGQKGDPGFGVPGPPGPPGPPGFKGAQGLKGDPGFPGNP
GLPGRSGSDGTPGPKGDPGPSGPPGLVGPPGFPGIGGQGPPGQPGPPGPVGPPGPPGLQG
VPGEKGDPGPPGFDIPGPPGDRGSPGFPGTPGLTGPPGSPGPPGREGISGFPGAKGEMGV
MGAPGPQGPPGTPGRDGLPGPKGSDGLPGQPGPSGLTGQKGTKGETGLPGPPGQVDPSKL
GSKGEKGEPGISGIPGVSGQKGYQGLQGDPGPPGFNGQPGAPGFPGPKGEPGLPGQSGPA
GPPGQKGAIGETGLPGVPGIKGSQGIAGRPGQPGPPGFPGLKGEKGNPGLSDIGIPGPKG
DTGFPGYPGNPGNKGTPGNPGLAGLPGNPGAKGEAGLPGFPGTPGIVGPRGIDGPPGNPG
LPGSPGPPGGDGRPGPPGLPGEKGQPGRDGIPGPAGQKGEPGQPGFGRPGPPGLPGLSGQ
KGEMGLPGPPGAPGLTGLKGEPGFQGFPGLQGQQGPPGLPGPPMEGPKGSPGPQGVPGRS
GPSGPPGLPGPEGPRGPPGNGGFKGEKGNPGQSGQPGLPGLKGDQGQPGRQGDPGRPGLN
GMKGDPGVPGVPGFPGMKGPIGPPGAIGFKGDQGPSGSPGPPGLPGPAGQTIVVKGDPGP
PGPPGQPGLKGPPGLSGPPGLPGPIGLPGDPGRDGLPGFDGPGGRKGERGLPGQPGFQGT
QGPPGPDGLQGPPGPPGTASVAHGFLITRHSQTTDTPLCPQGTIRIYDGFSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPKPMPMSMEPLTGQSI
QPFISRCAVCEAPAMVIAVHSQTIQIPSCPQGWDSLWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVEIAEMFSKPQSETLKAGDLRTRISR
CQVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcggggctgccgccgcctggctgccgcctgcctggtgctgctggggctctgg
gggctgagcgcagaggctgcggcttgccatggatgtgcatcaggatccaaatgtgactgc
agtggagtaaaaggcgaaaagggcgagagggggttcccagggttaggtggtcagcccggt
ttacctgggtttccgggaccagagggacctcctggcccaagaggcataaagggtgatgat
ggccttccagggcctaccggacccaaaggaatcagaggacctccaggtctgccaggattt
ccaggaacaccaggacttcctgggttaccagggcaagatgggccaccaggacttcaaggt
atccccggatgcaatggaacaaagggggaacgtggattcccaggcagtccaggttttcca
ggtttacaaggtcctcctggacctcctggcctaccaggtatgaagggtgatccgggtgaa
ataattttgtcatcactgccaggccagaaaggtgacccaggatttccaggacttccaggg
ttacaaggccctcctggtcccttgggcgcacaaggtcctattggtcctcctgggccacca
ggtttaacgggacctcctggtccaaaaggggttccagggcctaagggtaatatgggtttg
aacttccaaggacccaagggtgaaaaaggtgaccaaggccttcagggacctccagggcca
ccaggacaaattggggagcagaagagaccaaatgacgtagagtttcagaaaggagatcag
ggtattccaggagaacgaggtccaccaggaccccctgggccagaaggtcctcctggtcct
tcaggtggcatgaaaggtgaaaaaggtgagcaaggagagccaggcaaaagagggaaacct
ggcaaagatggagatcctggccagcccggtagggatggtttacctggcgaccctggttta
aatggtgttccaggaagagatggtgaaaagggtatgaaaggtgaacgtggtctgcctggt
cctcctggagttatcacaggaaatggtgcagaagtgggaccaaaagggagcaaaggactt
ccaggatttccaggacccaaaggcgagcgtggatatcctggcttgacagggcctcctggc
ttgtcagggcctccagggattacaggtataggcccacctggtccacctggtttgcctggg
gagcgaggacagaagggtattcagggtctacccggagtttccatacctggacagcctgga
cttgatggacggccagggccacctggaccgccaggtgcccctggacctcccggaacaact
atccctcctagtgacagagtgtgtcagcgaggacccccgggttttccaggacttccagga
gaaaaaggttttatgggggagcaaggccagaaaggtgataagggagagacgtgctttaat
tgtataggaactggcatttctgggcctcctggggacaggggaccacccggacctccaggt
agcccagggtctcctggtttcccgggaccgaaaggtgaaaaagggctaactggcttaacc
gggctggtcgggccaccaggatttccaggacctccaggtgcccctgggtttcctggttct
aaaggggaccccggggacagcctagctttcccaggactgaaaggtgacaaaggggacact
ggtttcccagggtctcctggtcttcctggcatagatggctctcctggacgagaaggactg
ccaggtcttcctggacccaagggggaacctggtggtgttgctttcaaaggaggaatggga
cctccgggtgatccaggagtgccaggtcttcctggagacagaggacctatgggacctcct
ggttttggcccacaaggtcctcaaggtgaaaaaggcattcaaggtgtatcgggtcgtcca
ggtcccccaggagttccaggtccgaaaggtgaacctggcgaaactattacagaaccagga
gttccaggctcccctggacctccaggaagaaatggtgaagtaggacttccaggtgatcct
ggtctgccaggtcagcctggcttgccaggcatctcaggtcctaagggtgatccaggtata
cctggcattggacttccaggcccaccaggcctaaaaggtttccctggaatggctggcccc
ccaggagcaccaggagcccctggacgaccagggttcgaagggccaccaggacaatctggt
ttcccaggacaaaagggggaccctggatttggtgtcccgggaccacctgggccaccaggg
ccaccgggttttaaaggagctcagggactgaaaggtgatcctggcttcccaggaaaccct
ggtttgccagggcggtcaggttcagatggaactcctgggccaaaaggtgaccctggacca
agcggaccacctgggttagtgggacccccagggttcccaggaattggtggtcaaggtcca
ccgggacaacctggccctccaggacctgtgggcccaccaggtccaccagggttacaagga
gttccaggtgaaaaaggagatcctggacctcctggattcgacatccctggtccacctggt
gacagaggcagtccaggatttccaggaacaccaggtctcactgggcctccaggttcacca
ggaccaccaggacgagagggaatatcaggatttccaggtgccaaaggtgaaatgggtgtg
atgggagctccaggtccacaaggccctcctggaactcctggcagagatggccttcctggt
cctaaaggcagtgatggtttaccaggtcaaccaggaccttctggactgacagggcagaaa
ggcacgaaaggtgaaacaggcctgccaggtccccctggacaagttgatccaagcaagctg
ggatcaaaaggagagaaaggcgagccaggcatttcaggtattcctggagtatcaggccag
aaaggttatcaaggtctccaaggcgacccagggccacctggattcaatgggcaaccaggt
gcaccaggatttccaggccccaagggagagccagggcttcctgggcagtcaggaccagca
ggacctccaggacaaaaaggtgccatcggagagacggggcttccaggtgtcccaggtatt
aaaggctctcaaggcatagcaggacgtcctggccagcctggcccaccaggatttccagga
ttaaagggggagaaaggcaacccaggtctttcagatattggaatccctggccctaagggt
gacactggtttccctggatacccaggtaaccctggcaacaaaggtacacctggaaatcct
ggtttggctggattaccaggtaatccaggtgcaaaaggagaagcaggccttcctggattc
ccagggacaccaggaattgtaggaccaagaggtattgatggacccccaggaaatcctggt
ctcccgggatcacctgggccaccaggtggtgatggccgtcctggccccccaggtcttcca
ggggagaaagggcaaccaggtcgggatggtattcctggaccagctggacagaagggtgaa
ccaggtcaaccaggttttgggcgcccaggacctcctggactcccaggattatcagggcaa
aagggcgagatgggattacctggccctccaggagcccctggacttacaggtctgaagggt
gaaccaggtttccagggattccccggtctacaaggtcaacaaggtccaccaggcctgcct
gggccacctatggaaggtcctaaaggtagtcctggtccacaaggtgtaccggggagatca
ggtccttcaggtcctccaggtctgccagggccagaaggtccacggggtccccctggaaat
ggaggatttaaaggagaaaaaggaaacccaggtcagtcaggccagcctggcctccctggt
ctaaaaggagatcaaggacaacctggacgccagggtgatcctggtcgtcccggcctgaat
ggaatgaaaggtgatcctggggttccaggtgttccaggatttccaggtatgaagggtccc
attggccctccaggagcaattggttttaaaggtgatcaaggcccatcaggttcaccaggt
ccaccaggcttacctggccctgctggacaaaccattgtagtaaaaggtgacccgggtcct
ccaggtccaccaggccagcctggattgaaagggccacctggattgtcaggcccaccagga
ttgccaggtccaataggccttcctggggatcctgggcgagatggacttcctggatttgat
ggtccaggaggacgcaaaggcgagagaggacttccaggccaaccaggctttcaaggtacg
cagggaccgcctggtcctgatggcttgcaaggcccaccaggtcctcctggaacagcttct
gttgctcatgggttccttataactcgacacagccagactacagacacaccactgtgccca
caaggaacaataaggatatacgatggattttctcttctgtacgtgcagggaaatgagaga
gcccatggccaggacttaggtactgctgggagctgtctccgccgtttcagcaccatgccc
ttcatgttctgtaacatcaacaatgtgtgtaattttgcatcaagaaatgattattcctat
tggctgtccactccaaagccaatgccaatgagcatggagccactgactgggcagagcatt
cagccattcattagccgatgtgcagtgtgtgaagctcctgccatggtcattgctgtccat
agtcagaccattcaaattccatcatgtccgcaaggttgggactctctttggattggttat
tctttcatgatgcacactagtgctggtgcagagggctcgggacaggccttggcatcccca
ggttcctgtttggaagaattccgctcagctccttttattgagtgtcatggtcgtggtact
tgtaattactacgctaattcatacagtttctggctggcaactgtagagatagcagaaatg
tttagtaaacctcagtcagagacattgaaagctggagacctgaggacacgtattagtcgt
tgtcaagtttgtatgaagaggacgtaa
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