Chrysemys picta (western painted turtle): 101952404
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Entry
101952404 CDS
T04662
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic04510
Focal adhesion
cpic04512
ECM-receptor interaction
cpic04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101952404 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101952404 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101952404 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpic04147
]
101952404 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
cpic00536
]
101952404 (COL4A6)
Exosome [BR:
cpic04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101952404 (COL4A6)
Glycosaminoglycan binding proteins [BR:
cpic00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101952404 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101952404
NCBI-ProteinID:
XP_008168271
UniProt:
A0A8C3F3C4
LinkDB
All DBs
Position
8:41032939..41227441
Genome browser
AA seq
1685 aa
AA seq
DB search
MHTGLVVLVAFCLAEELVLGGGKKSYNGPCGGRDCSAGCKCFPEKGARGRPGPIGNQGPI
GAPGFTGQEGLAGAKGERGAVGSPGSAGLKGDKGPMGVPGFQGINGIPGHPGQPGPRGFP
GLDGCNGSIGSPGVSGLDGFPGTQGPPGRFGPKGPKGDPVYDEGGPKGSKGENGLPGLDG
ISGPKGFPGPAGSVGPIGLPGLQGPKGAMGPPGPKGNMGLGFQGEKGEKGDVGPTGPAGP
PPSTGILEFMGFPKGKPGVKGEPGPKGFPGSKGFPGPLGFGGIGEKGEKGIPGLPGGRGF
LGLDGSDGIPGKKGHVGFSGFPGLDGVQGMKGELGEMGPPGPLISLDREDGLVSVGVPGD
PGTPGTPGPRGDEGIAGLPGLPGTPGLSALVQGPPGPMGFPGIPGTTGEPGDQGRATIGL
PGTPGIDGLPGMPGPPGLPGPSQILNGEPGEPGRPGQRGTPGVFGLKGTRGDPGDCACDG
GATRAGPKGAPGPLGPPGSPGEPGFKGSSGDPGTVGSQGLRGPPALPGQPGSPGLKGEKG
DPSFARGRGPRGDLGARGARGPSGIPGTPGRDGFPGLPGQPGPPGDGGLGFPGEKGLPGL
SGSKGRRGESGLPGIGFPGPSGVRGPAGDPGMDGFPGQSGLPGPPGITLPCVDSGAFGAP
GPPGIPGFPGPKGSPGFPGSPGQPGLSGSKGQPGIPGSMGFPGAPGFPGPRGDQGPQGLP
GLDGTDGFPGKMGAPGLSGVKGAPGEVFGAERGALGEPGRPGFPGNKGLIGEPGFPGQTG
VDGRPGSPGFKGQPGNPGFPGIGGLRGPPGPGGPFGIKGEPGPRGAVGFSGSPGLPGGKG
PTGDAGPPGPAGMKGFPGLDGFPGPLGDRGFPGSPGPLGRDGRPGFSGAKGEKGPPGLIG
FPGMPGLSGIPGVSGLKGIPGSAGREGNIGYSGPTGLKGDRGDQGPPGLLVLRPPELALV
LKGDKGDPGSAGLRGFPGPRGDKGFPGNLGQPGLPGSRGSPATDRGLPGDAGFPGLPGPP
GLPGQKGLAGIIGLPGFPGESGSEGISGAPGYPGTGGFRGPKGDPGESLGISGGLGDKGE
RGDRGFPGERGKDGPKGEPGYPGSTGMDGPKGIPGDLGREGPPGPPGIAGLRGNAGLPGS
PGQPGPVGFIGLSGIAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLNGPAGLPGPK
GEEGSPGIGLGAPGLPGQKGSSGDMGPPGTLGLPGLPGPPGISLPSNIPGRRGDPGRPGV
DGNPGPPGPPGPRGLSGPASNQGDTGLPGLPGVPGLPGIKGDMGLPGPPGIPGASGLKGV
KAEPGLMGMPGKDGLPGDPGISGLKGETGRRGFPGLPGAPGLVPKPEEVIVPPGLLGLPG
IDGVPGYAGDRGFQGPDGQQGPKGLSGRSGQVGRPGLPGSDGIVGDPGTPGIPGLPGLEG
VSGKPGPFGLPGMPGRGVSVGYTLVKHSQSEQIPPCPLGMNKLWEGYSLLYVEGQEKAHN
QDLGFAGSCLPRFSTMPFIYCNIYEVCYYASRNDKSYWLSTTAPIPMMPVSRLEIPQYIS
RCSVCEAPSQAIAVHSQDITIPQCPEGWRSLWIGYSFLMHTAAGAEGGGQSLVSPGSCLE
DFRATPFIECNGARGTCHYFANKYSFWLTTVERTQQFVGAPPSETLKAGQLRTRVSRCQV
CMKNL
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgcacacagggcttgttgtgctggttgctttctgcctggctgaggaactggtgcttggg
ggtgggaagaaatcctataacggaccatgtgggggtcgagattgcagcgcgggctgcaaa
tgttttccagagaaaggtgctcggggtcgaccgggacctattgggaaccaaggacctata
ggtgctccaggatttactgggcaagaaggtttggcaggggcaaaaggtgagagaggggca
gtgggctctccaggatcagctggactgaaaggagataagggtccaatgggagttcctgga
tttcaaggcatcaatggaattccgggccaccccggccagccagggcccagaggttttcct
ggacttgatggctgcaatggttctattgggagtcctggcgtttcagggttggatgggttt
cctggtacacagggaccacctggtcgctttggtcccaaaggtcccaaaggagatcctgtg
tatgacgaaggtggccctaaaggaagtaagggtgaaaatggccttcctggattggatggg
atttctggtccaaaaggtttccctggcccagcaggttctgtgggtcctataggattgcca
ggtttgcaggggccaaagggtgcaatggggccaccaggaccaaaaggtaatatgggatta
ggtttccaaggagagaaaggtgaaaagggagatgtcgggccaactggccctgcaggtcca
ccaccatccactgggatactagagttcatgggatttccaaaagggaaaccaggagtaaag
ggtgagccgggccctaaaggattccctgggagtaaaggattccctggccctctgggcttt
gggggtattggcgaaaaaggagaaaaggggatccctggcttaccaggtggcaggggattt
ctgggattggatggatctgatgggattccagggaaaaagggtcacgttggtttctctggt
tttcctgggctggatggagtgcaaggaatgaagggtgaattaggtgaaatgggtcctcca
ggccctcttatttctcttgatagagaagacggactggtctcagtaggtgtgccaggagat
cccgggactccagggactccaggccctcgaggagatgaaggaattgccggtttaccaggc
cttcctggcaccccaggtctctcagctcttgttcaagggccaccaggtcccatgggattt
ccaggtattccaggtactactggtgaaccaggagaccaagggagagcaacaattggatta
ccgggcactccaggcatagatggtttaccgggtatgccaggacctccaggattgcctggt
ccatcacaaatcctcaatggagaacctggggaaccaggaagacctggacaacggggaaca
ccaggagttttcggactaaaggggaccagaggggatccaggtgattgtgcttgtgatgga
ggagccacaagagctggaccaaaaggtgcaccaggccctctgggtccaccaggaagtcct
ggtgaacctggatttaagggttccagtggagatccaggcactgtgggttcacaagggctg
cgagggcctccagctttacctggtcaaccaggttctccaggccttaagggagaaaaaggg
gatccatcttttgcaagaggcagaggtccccggggggatcttggtgcaagaggagccaga
gggccttctggtatcccaggaactcctggcagagatggattcccaggtttaccaggccag
ccaggtcctccgggtgatggtggtctaggatttccaggtgaaaaaggcctgccaggatta
tccggctccaagggccggcgtggggagagcggtcttcctggcattggtttcccaggtcct
agtggagttcgcggccctgcaggtgacccaggaatggatggctttccaggacaatcaggt
cttccaggtcctccagggatcaccttgccctgtgtagattctggagcgtttggtgcacct
gggcctccaggaataccaggatttccaggtcctaagggcagcccggggttcccaggcagt
ccaggtcaacctggattaagtgggtcaaaaggacaaccaggtattccaggatcaatggga
tttccaggagcaccaggctttcctgggcctcgtggagatcagggaccacaaggacttcct
ggacttgatggaacagatggtttccctggaaagatgggagctcctggcttgtcaggggta
aaaggagctccaggtgaagtgtttggtgctgaaagaggagccctgggtgagcctggcaga
cctggattcccaggaaataaagggcttattggagaacctggatttcctggacagacgggt
gttgacggaaggcctggctcaccaggttttaaaggccaaccgggcaatccagggtttcca
ggtattggtggattgcgaggacctcctggtcctggaggtccatttggcattaaaggagaa
ccaggtcccaggggagcagttggcttctcaggatcaccaggacttcctggaggcaaagga
ccaactggcgatgcaggtccaccgggccctgctggtatgaaaggcttcccaggcctagat
ggttttccaggaccacttggggacagaggattcccaggatcacctgggcctttgggtaga
gatggacgtccaggtttctctggagcaaaaggtgaaaagggacctcccgggttgattggc
tttcctggcatgccaggcctgtctggtatccctggggtgagtgggctgaaaggaattcct
gggtcagctggaagggaaggaaatattggatattctggacccactggtctaaaaggtgac
cggggtgatcaagggccccctggactcctggttcttaggcctccagaattggcattggta
ttgaagggagacaaaggcgatcctgggtcagctggactgagaggattccctggacctaga
ggtgataaaggattccctggaaaccttggacaacctggtcttcctggttcacgagggtcg
ccagccacagatagaggactacctggtgatgcaggattcccaggtctgcctggaccgcct
ggcttgccaggacagaaaggactggctggaatcataggattacccggatttccaggagaa
agtggttcagagggtatctcaggagcaccagggtatccagggactggtggtttccgtggt
ccaaagggtgacccaggggaatcacttggaatttctggtgggttaggagataaaggagaa
cgaggggaccgtggattcccaggtgagaggggaaaagatgggccaaagggtgaaccagga
tacccaggaagcactggcatggatgggcctaaaggtatcccaggtgacctgggccgagaa
ggaccaccaggcccccctggaattgccgggttgcgaggaaatgcaggtctcccaggttcg
ccagggcagcctggacctgtaggattcatcggactgtctgggatagcagggccaaaagga
ttccctggatttcctggtttaaatggtctgaacggcttgccaggcacaaaagggtcacct
ggaacaccaggtctgagtgaagctggactgaacggccctgcagggcttccaggtcctaag
ggtgaagaaggttccccaggcattggcctaggagccccaggactccctgggcagaaagga
tcatcaggagacatgggtcctccaggtactttgggtctgcccggtttaccagggcctcct
ggcatctctcttccttcaaatatacctgggaggcgtggtgatcctggccgtcctggagtg
gatgggaatccaggccccccaggccctccaggtcctcgagggctctctggcccagcctcc
aatcaaggtgatactggccttccaggtctccctggagttcctggtttgccaggcataaag
ggtgacatgggactccccggtccacctggaattccaggagcttcaggactcaaaggtgtg
aaggctgagccaggccttatggggatgccaggtaaagatgggcttcccggggaccctgga
atttctggtctgaaaggtgaaactggtcgtcgaggtttcccaggcctaccaggcgctcca
ggcctagtaccaaaaccagaagaagtcatagttcctccagggctacttggtctgccagga
attgatggtgtccctggctatgctggagatcgtggatttcagggaccagatgggcagcaa
ggtccaaaaggtctgtcaggcagatcaggtcaggtgggacgtcctggtttaccggggtca
gatggcatagttggggatccaggaaccccaggtattccagggctaccaggattggaaggt
gtctctggaaagccaggcccatttggtttgcctggaatgccaggtcggggtgtaagcgtt
ggatacactttggtgaagcacagccagtcggagcagatcccgccatgcccacttggaatg
aataagctctgggagggttacagcttgctgtatgtggaggggcaggaaaaggcgcacaac
caggatctcggttttgctggctcctgcttgcctcgcttcagcaccatgccatttatttac
tgcaacatctacgaggtgtgctactatgccagccgcaatgacaaatcctactggctctcc
accactgctcccatccctatgatgccagtgagccggctggagatcccacagtacatcagt
cgttgctcggtgtgtgaagcaccttcccaggctattgcagtacacagccaggacattacc
atcccgcagtgccccgagggctggcgcagcctgtggattggatactcgttcctaatgcac
actgcagctggcgcagaaggcggaggtcagtcccttgtctcacccggctcttgccttgag
gatttccgtgctactcctttcattgaatgcaatggtgccagaggaacctgccattacttt
gcaaacaaatacagcttctggctgacgacagtcgaacgcacgcagcagtttgtcggtgct
cctccctcagaaactctgaaagcaggacagctccgaacacgagtcagccgttgccaagta
tgcatgaagaacttgtag
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integrated database retrieval system
