Chrysemys picta (western painted turtle): 101954071
Help
Entry
101954071 CDS
T04662
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101954071 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpic03041
]
101954071 (DDX42)
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101954071 (DDX42)
Spliceosome [BR:
cpic03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
101954071 (DDX42)
Complex B
101954071 (DDX42)
Complex C
U2 SnRNP specific factors
101954071 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
DUF4238
Motif
Other DBs
NCBI-GeneID:
101954071
NCBI-ProteinID:
XP_005313033
UniProt:
A0A8C3IVC7
LinkDB
All DBs
Position
Unknown
AA seq
955 aa
AA seq
DB search
MEKDIADIMNWNKGGPGTKRGFGFGGFAIAPGKKEEPKLPSQSHSAFGTPGSSAAFGKSA
PPQLPSFYKIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFNSKSGDSDSE
DDPLEAFMAEVEDQAARDMKRLEEKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPTAGV
VPEEEEDNLEYDSDGNPIAPSKKVIDPLPPIDHSEIEYPPFEKNFYEEHEEISSLTPQQI
VELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRD
MIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKA
YNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRM
FDMGFEYQVRSVASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVT
QIVEILPSGPSKWNWLTRHLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDM
DQSERNKVISDFKKKGIPILVATDVAARGLDIPSIKTVVNYDVARDIDTHTHRIGRTGRA
GEKGIAYTLLTPKDSNFAGDLVRNMEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLN
IGGGGLGYRERPGLGSDGSDRGSSSSNVMSNYEAYKPSTGAMGDRLSAMKAAFQSQYKSH
FVAASLNNQKTGSSAAGASGWTSAGSLNSVPTNSAQQNAASPDSPIAAAAVKGIPGFTSA
GNLSSVPVYPGVGIQGYNSTSASINSREGGNGGGGGGGVGGGGGSRERYSDNRSNRHNDS
PARHGDGNGRHSDNQRHGDGGGRHSDGYRQGDNRHGDSHRHSESRHSSGGSNSSRHGDGR
NNGDGRNMGDGRNNEGRNNESRINENKKDGSNRDSKTDGFAVPEPPKRKKSRWDS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagatattgctgacatcatgaactggaacaaaggtggaccaggcaccaaaaga
ggctttggttttggaggatttgccatagcccctggaaagaaagaagaaccaaaactccct
tcgcagtcccatagtgcttttggaacacctggctcttcagctgcgtttgggaagtccgca
ccgcctcagctcccttctttctacaaaattggatcaaagcgagcaaactttgatgaggag
aatgcatactttgaggatgaagaggaagattccagcaatgttgatttgccatacattccc
gcagagaattcccccactcgccagcagtttaattccaaatcaggagactctgacagtgaa
gatgatcccttggaagcattcatggctgaagtggaggatcaagcagctcgagacatgaag
agacttgaagagaaagacaaggaaagaaagaatacaaagggtattcgagatgacattgaa
gaggaagatgaccaagaagcttattttcgctacatggcagaaaaccctactgctggtgtg
gtcccagaagaggaagaggataacttggaatatgatagtgatgggaatccaattgcaccg
tccaaaaaagtcatagatcctcttccacctattgatcattcagagattgaataccctccg
ttcgagaagaacttctacgaggagcacgaagaaatcagcagcctcaccccacagcagata
gtggaactacgacataagttgaatctacgggtctctggtgcagctccccccagacctggc
agtagttttgctcattttggatttgatgaacagcttatgcatcaaattcggaaatctgag
tatacccagcccactcctatacagtgtcagggtgttccggttgcattaagcggcagagac
atgattggcatagctaagactggcagtgggaaaaccgcagcctttatctggccgatgttg
atccacatcatggatcaaaaggagttggagccaggggatggtcccattgcagtgatcgtg
tgcccaaccagagagctttgccaacagatccatgctgaatgtaaacgctttggtaaggcg
tataacctgcgctcggtagcagtgtatggaggaggaagtatgtgggaacaagccaaagct
ctacaggaaggggcggagatagtcgtctgcacaccaggtcgcttgattgatcatgtgaag
aagaaagctaccaatcttcaaagagtctcttatcttgtgtttgatgaagcagacagaatg
tttgacatgggttttgaataccaagtgagatcagttgccagccatgtgcgccctgacaga
caaactctcttgttcagtgccacttttcgtaaaaagattgagaagttggccagagatatc
ctgatcgacccgattcgagtggtgcagggagacattggagaggcaaatgaagatgttacc
caaattgtggagattctcccctctggccctagcaagtggaactggctgaccaggcacctg
gtggagttcacttcttctggaagtgttcttctatttgtcaccaagaaagcgaatgcagag
gagctggccaataaccttaagcaggaggatcataacctagggctgcttcacggtgacatg
gatcagagcgaaaggaataaagtcatttcagactttaagaaaaaggggatcccaattctg
gttgctactgatgtggcagctcgtggtctggatattccttccattaagacggtggtcaat
tacgatgtggctcgtgacatagacacccacacgcacagaattggacgtactggcagggct
ggtgagaagggaatagcttacactttactgactcccaaggatagtaattttgctggtgat
cttgtcagaaatatggaaggagccaatcaacatgtttcaaaagaactcttggacctcgca
atgcagaatgcctggttccggaaatcccgtttcaagggagggaaaggcaagaagctgaac
atcggcggtggtggcttaggataccgcgagcgccctggcctgggttccgatggctctgac
cgtgggagcagcagcagcaatgtgatgagtaactatgaagcgtacaagccatccactggg
gcaatgggagacagactgtctgcaatgaaagcagcatttcagtcacaatacaagagccac
tttgttgctgccagcttaaacaaccagaagactggtagctctgctgctggggccagtgga
tggaccagcgctgggagcttgaattcagtaccaacaaattcagcacagcagaatgcagca
agtcctgacagtccgattgccgctgctgcagtaaagggaatcccaggctttaccagtgct
gggaacctgagcagtgtacctgtctatccaggtgttggaattcagggatacaatagcaca
agtgccagcatcaacagcagagaaggtggcaatggcggtggtggaggaggaggagttggc
ggcggcggcggcagcagagaacgatacagtgacaacagaagcaatcgccacaatgacagt
ccggcgcgccatggagatggtaatggtcgccacagtgacaatcagcgccatggagatggt
ggtggtcgccacagcgatggctatcgccagggagacaaccgccatggggacagccaccgc
cacagtgaaagccgccactctagtggtggaagcaacagtagccgacatggtgacggccgc
aataacggtgacggccgcaatatgggtgacggtaggaacaacgagggtagaaacaacgag
agcaggatcaatgagaacaagaaagatggcagcaaccgggacagcaagacggatggtttt
gctgtccccgagcccccaaagcgcaagaagagccgatgggacagttaa
DBGET
integrated database retrieval system
