Chrysemys picta (western painted turtle): 135974884
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Entry
135974884 CDS
T04662
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cpic
Chrysemys picta (western painted turtle)
Pathway
cpic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135974884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpic03019
]
135974884
Enzymes [BR:
cpic01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135974884
Messenger RNA biogenesis [BR:
cpic03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135974884
mRNA degradation factors
3'-5' decay
Ski complex
135974884
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF3516
PhoH
Motif
Other DBs
NCBI-GeneID:
135974884
NCBI-ProteinID:
XP_065420103
LinkDB
All DBs
Position
12:1774855..1788928
Genome browser
AA seq
1019 aa
AA seq
DB search
MKAKGSGGKEGETPPAPTPAVQRADSLEELVLKEVTPGPPPPVQAVPPQPPKEQWAIPVD
ISSPVDDFYKRIPDPAFRWPFEPDVFQKQAILHLEKHDSVFVAAHTSAGKTVVAEYAIAL
AQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLHPDASCLIMTTEILRSMLY
NGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVNIILLSATVPNTLEFADWIG
RIKRKRIYVISTRRRPVPLEHHLYTGNSHKTQHELFLLLDARGTFLTKGYYAAVEAKKER
SSKHAQTFGAKQPTHMGTGPGQEKGVWLSLMDALRKRDQLPVVAFTFSRARCDDNASALT
TLDLTTSAEKSQIHLFFQKCLSRLKGSDRQLPQVLHMVELLKRGIGVHHSGILPILKEVV
EMLFSKGLVKILFATETFAMGVNMPARTVVFDSVRKHDGSGFRDLLPGEYIQMAGRAGRR
GLDTTGMVIILCKTRVPEMADLHRMMLGKPTQLQSQFRLTYTMILNLLRVEALRVEDMMK
RSFSEFHSRKDSQAHEHTIAQLSRRLAAMEEVDTSGQLSDLPEYGRAVQELQETRRMIQR
RVAESASGLKALAPGRVVIVNNPAHRNALGVILQVSSDAANRTFTTLVLCEKSPEGGDTG
GGSPTPEAPFPDDLLLNKLFLPEGPCGHAVEQLGPCDLTAITGKTLRVNAERILEDVKKR
QMPRFRSDPPGPSAVQAAQELLRLAEGGAGGLPRLDPVGTLQLKELAVAEGAMRLRRLEE
ALPGFQCVQSPRFPQQYVRLAERLRLRAELEHLRFLLSDQSLLLLPEYQQRVEVLRALRY
VDAGGAVQLAGRVACEISNHELLLTELVFDNLLTELRPEESVALLSCLVCQTKSQAEPPV
PSVLRKGMERIRAVAERIALLQRECGLRESVEDFVAQYNFGLVEVVYEWARGMPFAEIAR
LTEVQEGIIVRCIQRLDETCRDVRNAARVIGEPTLHAKMEQASNLIKRDIVFAASLYTQ
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccaaggggtcaggggggaaggagggagagactcccccagcccccacccccgcc
gtgcagagggcagacagcctagaggagctggtgctgaaggaggtgacccccgggcccccg
ccgcccgtccaggctgtgcccccccagccccccaaggagcaatgggcgattcccgtcgac
atctcctcgcctgtggacgacttctacaaacgcatccccgacccggccttccggtggccg
ttcgagccggatgtgttccagaaacaggccatcctgcacctggagaagcacgactcagtc
ttcgtggccgcgcacacctcggcggggaagacggtggtggccgaatacgccatcgccctg
gcccagaagcacatgaccaggaccatctacacttcccccatcaaggctctgtccaaccag
aagttccgagatttcaagaacacctttggggacgtggggctgctgacgggggatgtccag
ctgcaccccgacgcctcctgcctcatcatgaccaccgagatcctgcggtccatgctgtat
aacggctcagacgtgatccgggatctggagtgggtgatctttgacgaggttcattacatc
aacgatgcagagcgtggcgtggtgtgggaggaggtgctgatcatgctgccggagcacgtg
aacatcatcctgctaagtgccaccgtccccaacacgctggagttcgccgactggatcggg
cggatcaagcggaagcggatctacgtgatcagcacccggcggcgcccggtgcccctcgag
caccatctctacacgggcaacagccacaagacccagcacgaactcttcctgctcctcgac
gcccgcggcaccttcctcaccaaggggtactatgcggcggtggaggcgaagaaggagcgc
tccagcaaacacgcccagaccttcggggccaagcagcccacacacatgggcaccgggcca
ggccaggagaagggcgtgtggctctcgctgatggatgcgctgcggaagcgggaccagctg
cccgtggtggccttcaccttctcccgcgcccgctgcgacgacaacgcgtccgcgctcacc
accctcgacctgaccacgagcgccgagaagagccagatccacctcttcttccagaagtgc
ctctcccgcctcaagggctccgaccgccagctgccccaggtgctgcacatggtggagctg
ctgaagcggggcatcggggtgcaccacagcgggatcctgcccatcctcaaggaggtcgtg
gagatgctcttcagcaaagggctggtcaagatcctcttcgccaccgagacctttgccatg
ggggtgaacatgccggcccgcaccgtggtcttcgactccgtccgcaagcacgacggctcc
ggcttccgtgacctgttgccaggtgagtacatccagatggccgggcgggctgggcgccgg
ggcctggacaccacggggatggtcatcattctctgcaagacccgcgtgcccgagatggcc
gacctgcaccgcatgatgctggggaagccgacccagctgcagtcccagttccgcctgacc
tacaccatgatcctgaacctgctgcgggtggaggcgctgcgcgtggaggacatgatgaaa
cgcagcttctccgagttccacagccgcaaggacagccaggcccacgagcacaccatcgcc
cagctgagccgccggctggccgccatggaggaggtggacacgagcgggcagctgagcgac
ctgccggagtacggccgggccgtgcaggagctgcaggagacgcgccgcatgatccagaga
cgggtggcagagtcggccagcgggctgaaggctctggccccgggtcgagtggtgatcgtc
aataacccggctcaccggaacgccctgggggtgatcttacaggtctcctcagacgcagcc
aaccggacgttcaccaccctggtgctgtgtgagaagagccctgaggggggggacacggga
gggggcagccccaccccggaggctcccttccccgacgacctgctgctcaacaagctcttt
ctgccggaagggccctgcggccacgcggtggagcagctgggtccctgcgacctcacggcg
atcacgggcaagacgctgcgagtgaacgccgagcgcatcctggaggacgtcaagaagaga
cagatgccgcggttcaggagtgacccccccggcccctcggcggtgcaggcggcccaggag
ctgctgcggctggcggaggggggcgccggggggctgccccgcctggacccggtgggcacc
ctgcagctgaaggagctggcagtggcggagggcgccatgcggctccggcgcctggaggag
gcgctgcccggcttccagtgcgtccagagcccccgcttcccccagcagtacgtgcgactg
gccgagcggctgcggctgcgggcggagctggagcacctgcggttcctgctgtcggaccag
tccctgctgctgctgccggagtaccagcaacgtgtggaggtgctgcgggcgctgcgctac
gtggacgcggggggcgcggtgcagctggccgggcgcgtggcctgcgagatcagtaaccac
gagctgctgctgacggagctggtgttcgacaacctgctgacggagctgcggccggaggag
agcgtggccctgctcagctgcctggtctgccagaccaagagccaggccgagcccccggtg
cccagcgtcctccgcaagggcatggagcggatccgggcggtggccgagcgcatcgccctg
ctgcagcgggagtgcggcctgcgggagtcggtggaggatttcgtggcccagtacaacttc
ggcctggtggaggtggtgtacgagtgggcccgcggcatgcccttcgccgagattgcccgg
ctgacggaggtgcaggaggggatcatcgtgcgctgtatccagcggctggacgagacgtgc
cgggacgtgcgcaacgcggcccgcgtcatcggggagcccacgctgcacgccaagatggag
caggcctccaacctcatcaagagagacatcgtctttgccgccagcctctacacccagtga
DBGET
integrated database retrieval system
