Culex pipiens pallens (Northern house mosquito): 120413130
Help
Entry
120413130 CDS
T07310
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cpii
Culex pipiens pallens (Northern house mosquito)
Pathway
cpii03020
RNA polymerase
cpii03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120413130
09124 Replication and repair
03420 Nucleotide excision repair
120413130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpii03021
]
120413130
03400 DNA repair and recombination proteins [BR:
cpii03400
]
120413130
Enzymes [BR:
cpii01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120413130
Transcription machinery [BR:
cpii03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120413130
DNA repair and recombination proteins [BR:
cpii03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120413130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
120413130
NCBI-ProteinID:
XP_039429769
LinkDB
All DBs
Position
2:100049344..100062062
Genome browser
AA seq
1889 aa
AA seq
DB search
MNGDSKAPIRTVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIE
RTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVSPSNPKI
KEIVIKSKGQPRKRLAYVYDLCKGKKICEGGEDMDITKDGAPPDPNKKQGHGGCGHYQPS
LRRTGLDVIAEWKTVNEDSQEKKIAVTAERVWEILKHITDEECYVLGMDPKFARPDWMII
TVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIVKANNELKKNEATGAAAHVIAENIKML
QFHVATLVDNDMPGMPKAMQKSGKPLKSVKSRLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPGAKYIVRDNGERIDLR
FHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNMIRTHSTHP
DEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGHEIAGRFYG
NIQTVVNNWLLLEGHSIGIGDTIADPATYTEIQRAIRKAKEDVIGVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIK
LSNKVFEKRYRFDPTNERNIRRVFNEEVIKELTESGDVIQEIEAEYEQLLRDREALRQIF
PNGDSKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLKVIQGVRDLLQKCVIVAGTDRLS
KQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQCNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFDPTRISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIRIMNNEDNKFQ
DNDEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKRRIVITPEGEFK
AIGEWLLETDGTSMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKSVEKEMNNVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLNDAAAHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSIMGSSGMFFGPGATPSMSP
AMTPWQQSQTPGYGEWSPSGPPSGMTPGGPSFSPSAQSDASGMSPSWSPMPGSPSSPGPS
MSPYFPSSPSASPSYSPSSPNYAAASPGGASPGYSPTSPSYSPTSPNYSPTSPRYSPTSP
NYSPTSPNYSPTSPSYSPTSPLYSPTATYAPSSPAYSPTSPSYSPTSPYSPTSPSYSPTS
PAYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTSPNYSPSSPHYS
PTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSPTSPSYSPSSPQ
HSPGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTSPVYTPTSPHYSPSSPAYS
PTGQGYSPSSPASPTYSPTSPSYEDSVDD
NT seq
5670 nt
NT seq
+upstream
nt +downstream
nt
atgaacggcgattcgaaggcgccgatccggacggtgaagcgggtccagttcggaattctg
tctccggatgagatccgccgcatgtcggtcacggagggcggcatccagtatgcggaaacg
atggagggtggccggcccaagctgtgcggtctgatggatccccggcagggtgtgatcgag
cgaacgtcccgctgtcagacgtgcgccggcaacatgacggaatgtcccggccactttggc
cacattgatctggcgaagccggtctttcacatcggtttcgtgacgaagacgatcaagatt
ttgcgctgcgtttgcttttactgctcgaagatgttggtttcgccgagcaatcccaaaatc
aaggaaatcgtcatcaagtccaagggacagccgaggaagcgtctggcgtacgtgtacgat
ctgtgcaagggcaagaagatttgcgagggtggcgaggacatggacataacgaaggacggc
gccccgccggatccgaacaagaagcagggccacggcggttgcggtcactaccagccatcg
ctgcggcgtaccggattggacgtgattgccgagtggaagacggtcaacgaggactcgcag
gagaaaaagattgccgtaacggccgagcgggtgtgggaaatcctgaagcacattacggac
gaggagtgctacgtgctcggaatggacccgaagtttgcccgaccggattggatgatcatc
acggtgctgccggtgccaccgttggccgtacgaccggccgtcgtcatgtttggagcgacg
aagaatcaggacgatttgacccacaagctgtccgacattgtcaaggcaaacaacgaactc
aagaagaacgaagcgaccggcgcggcggctcacgtcatcgccgaaaacatcaagatgttg
cagttccatgtggccacgctggtcgataacgacatgcccggaatgcccaaagctatgcag
aagagcggcaaaccgttgaaatcggtcaaatctcggctaaagggtaaggaaggtcgtatc
cgtggtaatctgatgggtaagcgtgtggatttctccgcacgtactgtcatcacaccggat
cccaatctccgtatcgaccaggtcggagtgccgcgctcggtcgcccagaacatgaccttc
ccggagttggtaacaccgttcaacatcgatcgcatgcaggaactggtccgccgaggaaac
tcccagtacccgggggccaagtacatcgtccgagacaacggcgaacgtatcgatctgcgt
tttcacccgaaatccagcgatttgcatctgcagtgcggctacaaggtggagcgtcacttg
cgcgatgacgatctggtcattttcaaccgtcagcccacgctacacaagatgagtatgatg
ggacatcgtgtcaaagtgctgccctggtcgaccttccggatgaacctcagctgtacctca
ccgtacaacgccgattttgacggagacgaaatgaacctgcacgtgccgcaatccatggag
acgcgtgccgaaatcgagaacattcacataaccccgcgccagatcattacgccgcaggcc
aacaaacccgtcatgggtattgtgcaggacacgcttacggcggtgcgaaaaatgaccaaa
cgagacgtcttcctcgagaaggaacaaatgatgaatctgctcatgttcttgcccacgtgg
gacggcaaaatgccccaaccgtgcatcctgaagcccaaacccctgtggaccggaaagcag
atcttcacgctgatcatccccggcaacgtgaacatgatccgtacccattcgacccatccg
gacgaggaggacgacggcccgtacaagtggatctcgcccggagacaccaaggtcatggta
gaacacggcgaactcatcatgggcattctgtgcaagaaaacgctcggaacatcggccggt
tcgctgctgcatatcgtcttcctcgagctgggccacgaaatcgccggccggttctacggt
aacattcagaccgtcgtcaacaactggctgctgctggagggtcacagcatcggtatcggc
gacaccattgccgatcctgccacgtacacggaaattcagcgcgccattcgcaaagccaaa
gaggatgtgattggcgttatccagaaggcgcacaacatggaactggaaccgacgccgggt
aacacgctgcgtcagactttcgagaatcaggtgaatcgtattctgaacgatgctcgtgac
aagaccggtggttccgccaagaaatccctcaccgaatacaacaacctcaaggctatggtg
gtgtcgggctccaagggatccaacattaacatctcgcaggttattgcttgcgtgggtcaa
cagaacgttgaaggtaagcgtattccgttcgggttccgcaaacgcacgctgccccacttt
atcaaggacgattacggtcccgaatcgagaggcttcgtggagaactcgtaccttgccgga
ctgaccccaaccgagttttacttccacgctatgggaggtcgtgaaggtcttatcgatacc
gctgtcaagactgccgaaaccggttacatccagcgtcgtttgatcaaggctatggagtct
gtgatggtcaactatgacggaacggtgcgtaactcagtgggtcagttgattcagctgcgt
tacggcgaggacgggctgtgcggtgaaacggtagagttccagaatctacccacgatcaag
ctttcgaacaaggtgttcgagaaacgctaccgcttcgatccaaccaacgagcgcaacatc
cgacgcgtgttcaacgaagaagtcatcaaagagctgaccgagtctggtgacgtcattcag
gagatcgaagccgagtacgaacagctgctccgggatcgcgaagcactgcgtcagatcttc
ccgaacggtgactcgaaggtcgtacttccctgcaatcttcagcgtatgatctggaacgta
cagaaaattttccacatcaacaaacgagccccgacggatttgtcaccgctgaaggtcatc
cagggcgtacgcgatttgctacaaaaatgcgtcatcgtggccggaacggatcgtctgtcg
aagcaggctaacgagaacgctaccctgctgttccagtgtctggttcgttcaaccctgtgc
acaaagtacgtcgcggaagagttccgcctgaacaacgaagcgttcgagtggttgattgga
gaaattgaaacccgtttccagcaggcccagtgtaacccgggcgagatggtcggggccttg
gctgcccagtccctcggagaacctgccacccagatgacactgaacactttccattttgct
ggtgtgtcctcgaagaacgtaaccctgggtgtgccccgtttgaaggaaatcatcaatatc
tcaaagcgaccgaaagctccttcactaaccgttttccttaccggaggtgcggctcgtgac
gccgaaaaggccaagaacgtgctctgccggctggaacacacgacgctgcgaaaggtaacg
gccaacaccgccatctactacgatccagacccacagcgtacggtgatagctgaagatcag
gagtttgtaaacgtttactacgaaatgcccgattttgacccgacgcgaatctctccgtgg
ctgctgcgtatcgagcttgatcgcaagcgaatgacggacaagaagttgaccatggaacag
attgcggaaaagatcaacgccggattcggcgacgatttgaactgtatcttcaacgatgac
aacgcggacaagctggtgctgcgtatccgtatcatgaacaacgaggacaacaaattccag
gataacgacgaggaaaacatggacaagatggaggacgacatgttcctgcggtgtatcgag
gcaaatatgctttcggacatgacgctgcagggaatcgaagccatcggcaaggtgtacatg
catttgccgcaaacggacgccaagagaagaatcgttattacgcccgaaggtgaattcaaa
gccatcggcgagtggttgctggaaacggacggaacttcaatgatgaaggtgttgagcgag
cgagacgtggacccggttcgtacggcaagtaacgatatctgcgaaattttccaagtactt
ggaattgaagctgttcgaaaatctgtcgagaaggaaatgaacaatgttttgcaattttac
ggtctgtacgtaaactatcggcatttggctctcctttgcgatgtgatgacggctaagggt
caccttatggctatcactcgccacggtataaacagacaggatacgggagcgcttatgaga
tgttctttcgaagaaacggtagatgtgctgaacgatgcggcagctcacgcggaagttgat
ccgatgagaggtgtgtcggaaaacattattatgggtcagctaccccgtatgggaacgggt
tgtttcgatttgctgctcgacgcggagaaatgtaagctgggcatggaaattccgcataca
tcgataatgggaagctcgggaatgttctttggacctggagccacacccagcatgagtcca
gcgatgactccgtggcaacaatctcaaactccaggctacggtgagtggtctccgtcgggt
ccaccatcaggaatgactccaggaggaccgagtttttcaccttcggctcaatcggatgct
tcgggtatgtcaccgtcttggtctccgatgccgggttcgccgagctcaccgggaccgtca
atgtcaccgtacttcccctcatccccgagcgcatcgccctcgtactcgccaagcagtccc
aactacgctgcggcttccccgggaggagcttctccaggttactctccgaccagtcccagc
tattcgccgacgagcccgaattactcaccaaccagtccgagatattctccaacgagcccg
aactacagcccaacttcgccgaattacagcccaacatctccatcgtattcgccaacatct
ccgctgtactcaccaacggcaacctacgccccgtcgagtccagcctattcaccgacgtca
ccgtcctactcgccgacaagtccgtactcaccaacatcgcccagctactcgccaacatct
ccggcgtactctccaacgagtccatcctactctccatcaagtccgtcgtattctccgact
tcaccgtcctactcgcctacgtctccatcgtattcaccaaccagtcccaactacacgccg
gcaactccatcctactctccgaccagcccgaactactcacccagctcaccgcattactct
ccaacatcgccgagctattcacccagctcgcccaagtactcgcccacgagtccgtcgtac
tctccgacttccccatcgtacggcggaagtccgcagtacacaccggccagtccgcagtac
tcaccgaccagtcccaagtactcgcccacgagtccgagctattcgccaagctccccgcag
cactcgccgggcagcagcggtagcaacttcatggtcaactcaccaacctactcgccgacg
acggcccgctactcgccgaacatgtcctcgtactctccgggcagccagaaatattcgccc
actagtccggtgtacacgccgacatcgccgcactacagcccgtcgagtccggcctactcg
ccaaccggccagggctacagcccgtcgagtccggcaagcccgacctactcaccgaccagc
ccatcgtacgaggatagcgttgacgattag
DBGET
integrated database retrieval system
