Culex pipiens pallens (northern house mosquito): 120415274
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Entry
120415274 CDS
T07310
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03013
Nucleocytoplasmic transport
cpii03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120415274
03015 mRNA surveillance pathway
120415274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120415274
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120415274
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
120415274
NCBI-ProteinID:
XP_039432679
LinkDB
All DBs
Position
2:complement(130515513..130536498)
Genome browser
AA seq
1166 aa
AA seq
DB search
MTTEQSAADKMSEKPAATAAAGSAPAAAAAAPPPPQQKLSESDDFTEDSADNTADAARED
TSQQSGLATVESEYDTASDSPSDGEEEYDEQDEESGESGESGDEEEEEEEELGSETDGGG
SDDDVIEVLDYERQSGDGQEQEADAKKKVDDDEDRSNPQYIPKKGTFYEHDDRTLEDEED
GKELDDENAKNDDASVGGGGGGGSGDGRKGVEKSMASKTMKKWQASADRWTHDRFDESEQ
APKSRAELVSAYGYDIRSEDGPPRARRRRRYARGPNKYTRNWEDEDAYSKSNNVNEHTRP
RKSLPRPEEFPELGGGVGGMNNSSNNNSLNSSGSVGKSRSSQNMRRASRQSRSSIDERLD
ERTGGGRPRPPAERRRVDHDRGGMERDRGERYDQQRGGPDRNWDREREYDQQVQQHDGQY
RDGRNDGGRYSADRMANNNNSYHNKENKLLNQRSSKEKDRRGSDYKVITSLQFKNQTRNK
TNEGGLPMAGPGGVAGGQVVHSNSGGALSGSSQSNKMNNAMVPPVGGVPERMLDQRPVQQ
HHYPNQQQQQAQLIPQQPPPQLPQQQAPIQQAQPQPQQIQQQQLHQQQSSYDDHYDSYGD
SKMPKDAKFPYNPPANATIQSVEIGQTDIPKYPPPQSQAQRPSKDRQQPLPAGLPATSNV
AALNARSQISPRQIVATPQQQQQYQLQQAQYQQQQLHGPPAGQTPTQVPPPQLTQQQAQP
PPAQLHHMGAVNPQQQQQMLAAQDSSSRSSKRYSNLRQRSTLDQPPNVVAVPSPLHEQQQ
QQLLHQQQQQQLLLQQELHNQQQKLVTSQAPKPGVYPQQPTLPLNLPNEYLSQPAATSKP
QPTSQAPPVQYQHPAAAAAAYYNPNTPAATDFGTPNAPVPQPPTVVNQQAPNPLLSAPQY
PQYSQPSNQYIQAPPPAAYIPQTTAAPQPTPQPATAAPPPQILNYVPTINPTPPAQYPAA
PYTYTQTAYNPVVPVPQPVAPAPVVPINPSPSAATAALYQSSGGITYYAPQSQTQAPRPL
PSQRRPTAAIPILAPPDRKTKNNRADSAGATGPGGSSNDGDESQQQPGNNAADNIDHILD
NMFVQRAPYQPPTAVTSAARKSPSPGADKDGGKDGDKEAVDKMGESVKNLTIQEENRPAL
DALAAAGGAEKLDLAATTPSVDPTAG
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggagcaaagtgcggcggacaaaatgtcagaaaaacccgctgccaccgcggcc
gctggatcggccccagctgctgctgctgctgcacctcccccgccacagcagaagctgtcc
gagtcggatgatttcaccgaggattcggcggataacaccgcagacgccgcccgcgaggac
acatcgcagcagagcggcctcgcgacggtcgagtccgagtacgacacggcttcggactcg
ccgtcggacggcgaagaagagtacgacgaacaggacgaggaaagcggcgaaagtggtgag
agtggtgacgaggaggaggaagaagaggaagaactgggctcggagaccgacggcggtggt
tcggacgacgacgtgatcgaggtgttggactacgaacggcagagcggcgatggccaggag
caggaagcggacgccaagaagaaggtcgacgacgacgaagatcggagcaatccgcagtac
attccgaagaagggcacgttttacgagcacgacgaccggacgctggaggacgaggaggac
gggaaggagttggacgatgagaacgccaagaatgatgatgcgtcggtgggagggggtggg
ggtggcggcagtggagatggacggaagggagtggagaagtcgatggcttcgaagacgatg
aagaagtggcaagcgtcggcggatcgttggacgcacgatcggttcgatgagagcgagcag
gctccgaagtcgcgggcggaactggtctcggcgtacgggtacgacatccggagcgaggat
gggccgccgagggcgcgcaggagaaggcgctatgcccgcggtcccaacaagtacacccgc
aactgggaggatgaggacgcgtactccaagtcaaacaacgtgaacgagcacacgcgcccg
cgcaagtctcttccgcggccggaggaattccccgagctgggcggtggcgtcggcggcatg
aacaacagcagcaacaacaacagcctcaacagcagtggcagcgttggcaagtcccgctcg
agccagaacatgcgccgtgccagtcggcagtcccggtcgtcgatcgatgagcgattggat
gagcggaccggtggaggtcgtccgaggccgccggctgagcggcgtcgggttgatcacgat
cgtggtggcatggagagagatcgtggagagcggtatgatcaacagaggggaggtcctgat
aggaattgggatcgggagagggagtacgatcaacaggtgcagcagcacgatggtcagtat
cgggatggtcgtaacgacggaggtcggtatagtgcggacaggatggcgaacaacaataat
agctatcacaacaaggagaacaagctgttgaaccagaggagtagcaaggagaaggatcgc
cgaggaagtgactacaaggtgatcacgtcgctgcagttcaagaaccagaccaggaacaag
accaacgagggtggtttgccgatggctggtccgggaggtgtggccggaggccaggtcgtg
cacagcaacagcggaggagcgctgtccggaagtagtcagagcaacaagatgaacaacgca
atggttccaccagtgggtggagttccggagcgaatgttggaccagcgaccggttcagcag
catcactatccgaaccagcagcagcagcaagctcagttgattccacagcagcctccgccg
caacttccccagcagcaggccccgatccagcaggctcaaccgcagccgcagcagatccaa
cagcagcagcttcatcaacagcagtcgtcctacgacgatcactacgattcgtacggagat
tcgaagatgccgaaggatgccaagttcccgtacaatccacccgcgaacgccaccatccag
tcggtcgaaattggtcaaacggacattcccaagtacccgccgccgcagtcgcaggcgcaa
cgccccagcaaagatcgccaacagccgcttccggctggtctgccggcgaccagcaacgta
gcggcgctcaacgcccgatctcaaatttcaccccgccagatcgttgcgacgccgcagcaa
caacagcaataccagcttcagcaggctcaataccagcagcaacagctgcacgggccaccc
gcaggtcagacgcctacgcaggttccgcccccgcagctgacacagcagcaggcgcagcct
cctccggcacagctgcatcacatgggcgcggtcaatccgcaacagcagcagcagatgctc
gccgctcaggacagcagttcacggtcatcgaagcggtactccaacctgcgacaacggtca
accctggaccaacctccaaacgttgtggccgttccatcgccacttcacgaacagcaacag
cagcaattgcttcaccaacaacagcaacagcagctgcttctccagcaagaacttcacaac
cagcagcagaagctggtcacctcacaagcccccaagccgggcgtttacccacagcagcca
accttgccactgaacctgcccaacgaatatctgagccaaccggcggccacgagcaaaccg
caaccaacgagccaagcgccgccagttcagtaccagcacccggcagcggcagccgcagct
tactacaaccccaacacacctgccgcgaccgacttcggcacccccaacgcaccggtcccg
caaccgccaacggtcgtgaaccaacaagcacccaacccacttctcagcgcgccccaatat
ccgcaatactcacaacccagcaatcagtacatccaggccccgccccctgccgcgtacatc
ccgcaaacaacggccgcccctcaaccaaccccgcaaccagcaaccgcagcaccccctccc
caaatcctgaactacgtcccaaccatcaacccaacaccccccgcccaatacccggccgct
ccttacacctacacccaaaccgcgtacaaccccgtcgtccccgtcccgcaacccgttgcc
ccggccccggtcgtccccatcaacccatcgccctccgccgccacggcagctctctaccaa
tccagcggcggcatcacctactacgcgccccaatcccaaacgcaagccccacgaccactc
ccgtcccagcgccgtccaacggcggccatccccatcctggcgccgcccgatcgcaaaacg
aaaaacaaccgcgcggacagcgccggcgcaaccggcccaggaggctcctccaacgatggc
gacgagtcgcagcagcaacccggcaataacgccgccgacaacatcgaccacatcctggac
aacatgtttgtgcagcgagcgccgtaccagccgccgacggcggtgacgagtgccgcgcgg
aagagtccctcgcccggagcggacaaggacggcggcaaggacggggataaggaagcggtc
gacaagatgggcgagtcggtgaagaatctcaccatccaggaggagaaccgtccggcgttg
gacgccctggccgccgccggaggcgccgaaaagctagacctcgccgcaaccaccccgtcc
gtggatccgacggccggttga
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integrated database retrieval system
