Culex pipiens pallens (northern house mosquito): 120415394
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Entry
120415394 CDS
T07310
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120415394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120415394
03041 Spliceosome [BR:
cpii03041
]
120415394
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120415394
Spliceosome [BR:
cpii03041
]
Complex B
Other components
Prp19-related factors
120415394
Complex C
120415394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_2
TPR_12
TPR_8
Mad3_BUB1_I
TPR_10
ARM_TT21
TPR_7
ANAPC3
PPR
TPR_15
ARM_TT21_C
SNAP
DHR-2_Lobe_A
AllH
Motif
Other DBs
NCBI-GeneID:
120415394
NCBI-ProteinID:
XP_039432854
LinkDB
All DBs
Position
2:184688162..184691004
Genome browser
AA seq
862 aa
AA seq
DB search
MPISAGVDLADVFFNEEDLPYEEEILRNAYSVKHWMRYVEHKRNAPKFVINTVFERALKE
LPGSYKLWYNYLKTLRRQVKGKCITDSEYEEVNNAFERALVFMHKMPRIWMDYCAFMTGQ
CRITRTRQLFDRALRALPITQHHRMWPLYLQFLRKFDIPETAVRVWRRYLKLCPEDAEEY
VEFLVSIGHLDEAAQQLASIVDNENFVSKHGKSNHQLWNELCELISKNPDKVHSLNVDAI
IRGGLRRYTDQLGHLWNSLADYYVRSGLFDRARDIYEEAIQTVTTVRDFSQVFDAYAQFE
ELSLSKVMEEMAKNPTPTEDEEIDVELRMSRFEYLMERRLLLLNSVLLRQNPHNVAEWHK
RIELFEGKPHEIINTYTEAVHTVQPKLAVGKLYTLWVEFAKFYEKNKQLPDARIVFEKAV
QVDYLKVDELASVWCEWSEMEIRAENYDEALKIMQRATAMPKRKVAYHDDTETVQMRVYK
SLKLWSMYADLEESFGTFQTCKQVYDRIIDLKICTPQIIINYALFLEEHNYFEEAFKAYE
KGISLFKWPNVYDIWNTYLTKFLKRYGGQKLERARDLFEQCLDGCPPDLAKNLYLLYAKL
EEDHGLARHAMAVYERATTAVKEDETFAMFNLYIKKAAEIYGIPRTRQIYEKAIEVLQEA
QSRQMCMLFAEMETKLGEIDRARAIYAHCSQMCDPRITAEFWQTWKEFEIRHGNEDTMRE
MLRIKRSIQATYNTQINMMSATLINSAVTGAGSSEPRDAMRALEAKAAETSARAIAAVGA
SGGNIMFVRGETQGGSKNADKVVNPDEIDIDEDDEEEEDEEEGAEGEGGEAAEDVSKKMP
IQKQAVPAKVFGSLRREEEEDE
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgccgatatctgcgggcgttgatttggcggatgtcttcttcaatgaagaggacctgccg
tacgaggaggaaatcctccggaacgcgtactcggtcaagcactggatgcggtacgtcgag
cacaagcgcaatgcgcccaagttcgtgatcaatacggtgtttgagcgagcgttgaaggag
ctgcccgggtcgtacaaactttggtacaactatttgaagacgctgcggcggcaggttaag
ggcaagtgtatcacggattcggagtatgaggaggttaataatgcgttcgagcgggcgctg
gtgtttatgcacaagatgccccggatttggatggattactgtgcgttcatgacggggcag
tgccggataacgcggaccaggcagctgttcgatagggcgttgagggcgctgccgattacg
cagcaccaccggatgtggccgctgtatttgcagtttttgcgcaagtttgacatcccggag
acggcggttcgagtttggcgaaggtatctgaagctttgtccggaggacgccgaggagtac
gtggagtttttggtgtcgattggacatttggacgaggcggcgcagcagttggccagcatc
gtggacaacgagaactttgtgtcgaagcacggcaagtcgaaccatcagctgtggaacgag
ctgtgtgagttgatttccaagaatccggacaaggttcactcgttgaacgtggacgcgatt
attcggggaggtctgcgtcgttacacggaccagttgggccacctgtggaactcgttggcc
gattattacgttcgaagtgggttgtttgatcgggcgcgggatatttacgaggaggccata
cagaccgtaacgacggttcgtgactttagccaggtgtttgacgcgtacgcccagtttgag
gaactgagcttgagcaaagtgatggaagagatggccaagaatccgaccccgactgaggac
gaagaaatcgacgtggagcttcggatgtctcgctttgaatatctgatggagcgtcggttg
ctgctgttgaacagtgtcttgttgaggcagaatccgcacaatgtggccgagtggcacaag
cgtatcgagctgttcgagggcaagccccacgagatcatcaacacgtacacggaggcggtg
cacacggttcagccaaaactggccgttggcaagctgtacacgctgtgggttgagtttgcc
aagttttacgaaaagaacaaacagcttccggatgcgaggattgtgtttgaaaaggccgtc
caggttgactacttgaaggtggacgaactggccagcgtttggtgcgagtggtccgagatg
gaaatccgcgcggagaattacgacgaagcgttgaagatcatgcagcgcgcaacggcgatg
cccaagcggaaggttgcctaccacgacgatacggagacggttcagatgcgcgtttacaag
tcactcaagctgtggtccatgtacgcggatcttgaagagtccttcgggacgttccaaacc
tgcaagcaggtctacgaccgcattatcgacctgaagatttgcacgccccagatcatcatc
aactacgcgctcttcctagaagaacacaactactttgaagaagcgttcaaagcgtacgaa
aagggcatctccctgttcaagtggcccaacgtgtacgacatctggaacacctacctcacg
aaattcctcaaacgctacggcggccaaaagctcgaacgtgctcgcgatctcttcgagcaa
tgcctcgacggatgtcccccagacctggcgaaaaacctgtacctcttgtacgccaaactc
gaggaagatcacggcctggcccgtcacgcgatggccgtctacgagcgcgcaacaaccgcc
gtcaaggaggacgaaacgttcgccatgttcaacctgtacatcaaaaaggccgccgaaatc
tacggaatcccgcgcacccgccagatctacgaaaaggccatcgaggtcctccaggaagcg
caatcccgccagatgtgcatgctgttcgccgagatggaaacgaaactcggcgaaatcgac
cgggcccgcgccatctacgcgcactgctcgcaaatgtgcgacccgcgcattacggccgag
ttctggcagacgtggaaggagttcgagattcgtcacggcaacgaggacacgatgcgcgag
atgttgcgcatcaagcgatcgatccaggccacgtacaacacgcaaatcaacatgatgtcc
gcgacgttgatcaactcggcggtgacgggagcgggctcgtcggaaccgagggatgcgatg
cgcgcactggaggcgaaggcagcggaaacgtcggcccgggcgatcgcggccgttggggcg
agcggcggcaacattatgtttgtgcggggtgagacgcagggcgggtcgaagaacgccgac
aaggtggtcaacccggacgagatcgacatcgacgaggatgacgaggaggaagaggatgag
gaagaaggggccgagggtgagggtggggaagctgcggaggacgttagcaagaagatgccc
attcagaagcaggcggttccggccaaggtgtttggtagtttgcggcgcgaagaggaggag
gacgagtaa
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