Culex pipiens pallens (northern house mosquito): 120415454
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Entry
120415454 CDS
T07310
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii04512
ECM-receptor interaction
cpii04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120415454
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120415454
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpii04147
]
120415454
00536 Glycosaminoglycan binding proteins [BR:
cpii00536
]
120415454
Exosome [BR:
cpii04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120415454
Glycosaminoglycan binding proteins [BR:
cpii00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120415454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120415454
NCBI-ProteinID:
XP_039432933
LinkDB
All DBs
Position
2:94058441..94124836
Genome browser
AA seq
1806 aa
AA seq
DB search
MPKPAGPTSVGLGNRFPRNKRKSSISTMSYLLVIVLSVLQSVDLTGAVVCNRTECDCKGL
KGAPGQIGPHGVPGAAGLPGDIGFDGPPGYSGERGVRGEFGSTGDKGYRGDTGPRGPVGY
PGIPGLPGDDGPRGPRGIDGCNGTDGAMGIPGMPGWPGDRGQPGLQGPIGFRGDSGEGGI
NSKGTKGSIGESGRPGITGADGFKGNRGLPGIDGINGIDGAVGPKGELGDEGEASIPFCP
GEPGEPGEPLYYFSSKNSTVNKGISGPKGDNGADGLPGIPGRKGDTGGYGERGLKGFKGE
EGNVGDRGKQGKDGPPGPSGEKGEKGAPGFAGRDGELGDKGEPGDDGRSGLPGTQGVRGP
PGLYDPNLAPIVIGPVGPQGDVGAAGNQGLGGIPGNPGRRGLMGLQGPPGDPGIDGPRGK
KGTTIAGQRGDDGESGPRGQVGPRGVSGPAGTKGPKGYPGRSILGEKGESGLPGLNGEYG
DKGDQGEIGITGDKGLPGIGYNITGPPGPDGIPGMQGPPGEAGWNGYDGSKGDRGFRGED
CGICPPGPRGIKGEGGDIGRPGWEGFDGNRGLPGPRGLKGGPGKPGPQGIPGLQGNPGEN
GEPGRPGMKGAKGEVIRVGNMVHFPGDKGEMGMFGLQGQQGDVGLAGEPGERGFPGEQGL
FGDDGSPGLRGRDGDPGLPGRDGVHGRNAVYNAYNMWGLKGSQGPPGDDGTPGERGDQGD
RGERGATAEFDYLITGDKGVRGDFGDEGPFGEPGYRGEIGDEGFRGAPGVQGSVGDSIQG
PIGYKGYFGIIGDHGLQGEDGFPGMPGVDGPPGLPGLKGQRGDPGRAVLFGEKGEEGEAG
YFGEFGDKGFKGMEGYRGAPGITGPKGEKGDDGVMGRIGLPGNKGMVGDFIYGDRGAPGA
DGTPGRTAPYGDKGERGEPGIEGPSGPKGEIGDTGRDGLPGFAGDDGEPGEPGLRGIHGY
MGGEGDQGERGEVGDQGNIGLTGRRGLVGLRGEKGEIGDLGDIGFPGRFGRNGTKGERGD
EGFAGVRGPKGSGSFSGHKGEPGIFGLRGPPGLDGMPGLFGMKGEEGEAGNVIDGTPGLK
GPKGAPGFNGRSGLPGLKGERGDEGRFGSKGIQGDKGRDGYPGIPGRRGKDGLRGLPGLR
GLSGSRGEQGEEGDFGYVGFVGDKGERGDIGRIGLPGIEGMLGDPGFKGLPGELIFRSPA
KGDRGDSGFPGPEGMPGIQGVKGRIGYPGTKGEPGLRGEPGFAGRNGLDGLKGQQGDRGY
KGPRGTLDIRPEQGDQGESGYDGFPGRLGLRGSKGAPGDYGDDGPPGPRGEVGMVSGAFK
GIKGEVGFEGAPGLEGLPGLPGPQGMSGAPGEKGLSGSIGISLRGLKGVAGDDGLIGLDG
MPGPLGFVGEVGLPGRPGMRGFPGIKGEFGDVGEDGYYGRLGLKGVKGERGDPIPLDDWR
PNQPGERGVPGNKGAPGDEGDMGLPGYPGLIGLKGERGLQGLDGEEGQMGFKGERGFQGA
PGRDGLDGYPGIRGEIGDPAPPPPPPKSRGYIFTKHSQTVHIPDCPLNTIKLWDGYSLVS
VIGSSRSVGQDLGSAGSCMRKFSTMPYLFCDINNVCNYATNNDDSIWLASPEPMPMSMAP
MKSREVAQYISRCSVCETTTRVIAVHSQTMAIPDCPGGWEELWIGYSYVMHTTDNSGGFG
MDLTSPGSCLEEFRAQPVIECHGHGTCNFYDGITSFWLTIIEDGEEFNQPKQQTLKADQT
SKISRCIVCRRKAGFLRVLSDGGISASALRRPDIATVQKPYYPPPPPQPPRRRIRPGSRQ
RNRNSG
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaacccgcgggcccaacgtcggtgggcctggggaatcgatttccgcggaataaa
cggaaatcctcgatatccacaatgagttacctgctagtgatagtgctcagtgtgttgcag
tcggtggaccttacgggagctgtggtctgcaaccgaacggaatgtgactgcaagggactg
aagggagcccccggacagattggaccacatggcgtgccgggagcggccggtcttcccggt
gacattggctttgacggacctccgggttattccggagagcgaggtgtccgcggtgaattt
ggttccacgggcgacaagggttaccggggtgataccggacctcgtggaccggttggatat
ccgggaattccgggtctgccgggtgatgatggaccgaggggccctcgaggaattgacggg
tgcaacggaaccgacggtgcaatgggaattccgggtatgcctggctggccaggagaccgt
ggtcaaccaggtttgcagggacctatcggttttcgcggagactcaggcgagggaggtatc
aactccaagggaacgaagggttcgataggcgaatcaggaagacccggaataacaggtgcc
gacggattcaagggtaaccgtggattgcccggaatcgatggcatcaacggtatagatggc
gcagtaggcccgaaaggagaactaggtgacgagggggaagcatccattccgttctgtcct
ggagagcccggagaacctggtgaaccgctgtactacttttcgagcaagaactcaactgtc
aacaagggtatcagtggtccgaagggtgataacggagcggacggtctgccgggtattcca
ggccgaaaaggagataccggtggttacggtgagcgtggcctcaagggcttcaagggcgaa
gaaggtaacgttggagaccgtggaaagcaaggaaaggatggtccacctggaccttccgga
gaaaagggtgaaaaaggtgctccaggattcgctggtagagacggagaacttggagataag
ggtgaacccggtgacgatggtcgttctggattgcccggaacgcaaggtgtccgaggaccg
cccggattatacgatccaaatctggcaccaattgttatcggcccagtaggaccacaagga
gacgtaggcgctgccggcaaccaaggcttgggaggaatccctggcaatccaggcagacgt
ggtctcatgggtttgcagggtcctcctggtgatccaggtattgatggaccacgtggtaag
aaaggcacaacgattgctggacagcgtggcgacgacggtgaaagtggacctcgtggtcaa
gtaggccctcgtggagtttctggtccagcgggtactaaaggtcccaagggatatcccggc
agaagcattcttggcgaaaagggagaatctggattgccaggacttaacggagaatacggc
gacaagggtgaccaaggtgaaatcggcataacgggcgataaaggtctaccaggaattgga
tacaacattaccggtccacccggaccagacggaattcctggcatgcagggtcctccggga
gaagcgggctggaatgggtatgatggctcaaaaggagatagaggtttccgtggtgaagac
tgtggaatatgtcctcctggacccaggggcatcaagggtgagggaggtgacattggtagg
cccggatgggaaggattcgatggcaatcgaggcttgccaggaccacgaggcttgaagggc
ggacctggtaaacctggaccacagggaattccaggacttcaaggaaatcctggagaaaac
ggcgaaccaggtcggccaggtatgaagggagcgaaaggagaggtcatccgcgtgggcaac
atggtgcacttcccgggagataagggtgagatgggcatgttcggtctgcaaggtcagcaa
ggagacgtgggattggctggagaaccgggcgaacgcggcttccctggcgagcaaggtctc
ttcggagacgatggcagtcccggtttgcgaggtcgtgatggtgatcctggtctacctggt
cgggacggagttcatggcagaaatgcagtgtacaacgcctacaacatgtgggggctgaag
ggatcgcaaggtcctccgggagatgacggtactccaggcgagcgaggagatcagggagat
cgcggtgagcgaggtgccacagctgagtttgactacctcataacgggcgataagggcgta
cggggagacttcggcgacgaaggaccttttggtgagcccggctatcgtggagaaattgga
gatgaaggtttcagaggcgccccaggtgtccagggatcggtcggtgacagcattcagggt
ccgattggatacaagggatactttggcattatcggtgatcatggtctgcaaggtgaagat
ggttttcccggtatgcccggcgtcgacggccctcccggattgcccggtttgaaaggtcaa
agaggtgaccccggacgggccgtgttgttcggcgaaaagggagaagagggtgaagcgggt
tatttcggagagttcggagacaaaggattcaaaggaatggaaggttatcgcggtgctcct
ggtattaccggtccaaaaggtgaaaagggcgacgatggcgtgatggggagaattggatta
cctggaaacaagggtatggtcggagattttatttatggtgacaggggtgcacctggtgct
gatggaacccctggaagaactgcgccctatggtgacaaaggagaacggggtgaaccagga
atagaaggaccttctggacccaagggagagattggcgacactggtagagacgggcttcct
ggatttgcaggagatgatggagaacctggtgagccaggtttacgaggcatccacggatat
atgggcggagaaggcgaccaaggtgaacggggtgaagtaggagatcaaggaaatatcggt
ttgaccggtcgacgtggcttggttggcctgcggggtgaaaagggcgaaattggcgacctt
ggtgatattggtttccctggaagatttggtcgtaacggaaccaagggagaacgtggtgac
gaaggtttcgctggcgtgagaggtcccaagggatctggttcgttcagcggccataaagga
gaaccgggaatttttggacttcgcggaccaccaggattggacggtatgcctggtctgttt
ggcatgaagggcgaagaaggtgaagctggaaatgtgatcgacggcacccctggactcaaa
ggtcctaagggagcaccaggattcaacggccgttctgggcttccgggattaaagggcgaa
cgcggtgacgaaggaaggttcggttcgaaaggcatccaaggtgataagggacgcgatgga
tatccaggtattccaggacgacgtggaaaggatggtctccgtggattaccgggattgcga
ggactctccggaagcagaggagaacaaggcgaagagggagactttggatatgttggattc
gttggagacaagggtgaacgcggagacatcggccgtatcggtctaccaggaattgaaggc
atgttgggtgatccaggcttcaaaggtttaccaggagagcttatcttcagatcaccagcg
aagggagatcgtggcgattcaggattccctggcccggaaggaatgcctggcatacaagga
gtcaagggacgaattggatatcccggcacgaaaggagagcctggtcttcgaggagaaccc
ggttttgcaggaaggaatggtttggatggactgaagggacaacaaggagaccgtggctac
aaaggtccacgtggtacactggacattcgaccagaacagggagatcaaggagaatccggc
tatgatggcttcccgggacgtcttggcctacgcggcagtaagggagctcccggagattac
ggagatgatggtccgccaggtccacggggagaagttggaatggtcagcggagccttcaag
ggcattaagggtgaagttggattcgaaggcgctcctggcttggaaggattgcctggactc
cccggtcctcaaggaatgtctggagctcctggtgaaaagggtctctcgggaagcattgga
atctcgttgcgtggtctaaagggcgtagccggagatgatggtttgatcggcctcgacgga
atgcccggcccactaggattcgtcggtgaagttggtcttccaggacgacctggcatgcga
ggattcccaggtatcaagggtgaattcggagatgttggagaagatggatactacggcaga
ctgggacttaaaggagtcaaaggtgaacgaggagatccgattcctttggatgactggcga
ccaaatcagcctggtgaacgcggagttcccggaaataagggagcaccaggagatgaagga
gatatgggacttccaggctaccctggactcattggattgaagggcgagcgaggattacaa
ggacttgatggtgaagaaggtcagatgggtttcaagggagagagaggtttccaaggagct
ccaggacgcgatggtttggacggatatcccggaattagaggagagattggtgatccagct
cctcctccaccaccgccaaagagccgtggatacattttcaccaaacactcacagaccgtc
cacattccggactgcccgttgaataccatcaaactgtgggatggttattcgctggtgagc
gttattggaagtagccgttctgtgggacaagatctaggctctgccgggtcatgcatgcgc
aagttcagcaccatgccgtacctgttctgtgacatcaacaacgtctgtaattatgccacg
aataacgacgacagcatttggctggcctctccagaacccatgccgatgtctatggcaccg
atgaagtcccgcgaggtcgcccagtacatttcgagatgttccgtgtgcgaaaccactaca
cgagtcatcgctgtccatagccaaaccatggcaattcctgactgtcccggaggctgggaa
gaattgtggatcggatacagttacgtaatgcacaccaccgacaacagcggaggcttcggt
atggacctgacgtcacctggttcctgcttggaagagttccgcgcccaaccggtgatcgag
tgtcacggccatggaacgtgtaacttctacgacggtatcacctcgttctggctgacgatc
atcgaggatggcgaagagttcaaccagccgaagcagcaaacgctcaaggccgatcaaacc
agcaagattagcaggtgcatagtttgccgccgcaaggccggattcctgcgggttctctcg
gatggtggcatcagcgcgtcggcgcttcgtcgtccggacattgcgaccgtccagaagccg
tactacccgccaccaccgccgcagcctccgagacggcgaattaggccgggaagccgacag
cgaaaccgtaacagtggttaa
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integrated database retrieval system
