Culex pipiens pallens (northern house mosquito): 120419219
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Entry
120419219 CDS
T07310
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X3
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120419219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpii03021
]
120419219
03036 Chromosome and associated proteins [BR:
cpii03036
]
120419219
Transcription machinery [BR:
cpii03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120419219
Chromosome and associated proteins [BR:
cpii03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
120419219
PBAF complex
120419219
GBAF(ncBAF) complex
120419219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
BRCT_2
Motif
Other DBs
NCBI-GeneID:
120419219
NCBI-ProteinID:
XP_039437811
LinkDB
All DBs
Position
3:175133076..175210742
Genome browser
AA seq
1140 aa
AA seq
DB search
MVTLGPKKDGGPNAEFFNAPESLQGFETVRQWLQKNFKKYLAPDPPTKESLAQLIVQFVQ
YQETKLGKSSQDPPTTRLPMRCFMDFKPGGALCHILATMYRYKAEQRWRKFDFTVNKNPM
RKDPIIQMLLDMETALIEAECMRLPIVYIRPEVDKQTANRITDIVTNHQGEMTPDEEEAT
HIIYPAVDPLPEDYARPTFRRDKHVMIHWYYFPESFDTWVPNTFDLPDNVPDCPLSPGDR
WRVSASWVTDLEEYNEWMAEEDYEVDEAGRKKVHKHRLSVDDLMSAGDEKVKKPGKLAHQ
KRKRSPSPQAKGGKRKSGRSPAVFQKKPRADDEESEDLTKDMDDPPAETNLTEVKASSSN
SASGPATPQPPKRDPEMMPLKYATMTDLDDDIDRANADRAGDDSQAGKTSDNSNTQEFPH
KGDLEDNVTEQTHHIVVPSYSAWFDYNSIHVVEKRALPEFFNGKNKSKTPEIFLAYRNFM
IDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADSRPTPMGPPPTS
HFHVLSDTPSGLQPLNPPKTAQPSAAKTLLDLDKKGDKKEDAPAGSVDAIKSEPGAPGAL
PGSDPSGQFGLRLDQYAKKPSAMRNKTAASMSRDWTEQETLLLLEGLEMYKDDWNKVCEH
VGSRTQDECILHFLRLPIEDPYLEDDNTYLGPLSYQPIPFSKAGNPIMSTVAFLASVVDP
RIAASAAKAAMEEFAAIKDEVPASMMDAHLKNVEKSSFGGKFDPYAGLTTSGIAGTGTDK
DKEEEEGKTAGGATTQAGSSGAAPVTPGGDVEMKDVTKKEDAGSDPSKPAEAGADPAAGD
KTKDKDAESTAVVAVAKENGDPKVFNEGNLQSAAAAALAAAAVKAKHLAAVEERKIKSLV
ALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARQ
QAHQRFQMEQGQWQQPPPMGVGPGVPPPPGGIPAAQQQQPQGPPGQGPMPTPGTNPQQQP
PVPSTGGHPGPVPPNISAPAQQQQQPQQLQPPSSNGVISAPPTSMPVDAGTTPNSVMPPT
AAPAQPGIPPAVLQQQQPPQSQQLAAAQPAPAAAQAAPGGVPPSSVAGPPGPMPPQAPSS
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggtcacgctaggccccaaaaaggatggcggaccgaacgccgagttcttcaacgcgccc
gaatcgctgcagggctttgaaacggtgcgccagtggctgcagaaaaacttcaagaagtat
ctggcgccggatccgcccaccaaggagtcgctggcccagttgatcgtgcagtttgtgcag
taccaggagaccaagctgggcaaaagttcgcaggatccgccgacgacccggctgccgatg
cgatgcttcatggactttaagccgggcggtgcgctgtgccatattctggccaccatgtac
cggtacaaggcggagcagcgttggcgcaagtttgactttaccgtcaacaagaacccgatg
cgcaaggaccccatcatccagatgctgttggacatggagacggcgctgatcgaggccgag
tgcatgcggctgccgatcgtgtacatccggccggaggtggacaagcagacggcgaaccgc
atcacggacattgtgacgaatcaccagggtgagatgactccggacgaggaggaggcgacg
cacatcatctacccggcggttgatccgttgccggaggattacgcccggcctacgttccgt
cgggacaagcacgtcatgattcattggtattacttcccggagtcgttcgatacgtgggtt
ccgaacacgttcgatctgccggacaacgttccggactgtccgctgtcgccgggggatcgt
tggcgtgtttctgcgtcttgggtcaccgacctagaagagtacaacgagtggatggccgag
gaggattacgaggtggatgaagccggtcgcaagaaggtccacaagcatcggctcagcgta
gacgatttgatgtccgccggggacgaaaaggtaaaaaaacccggcaagttggctcaccag
aagcgcaaacgttcgccgtcgccgcaagccaagggcggaaagcgcaagagtggccgttcg
ccggccgttttccaaaagaaaccacgcgccgacgacgaggaatcggaagatttaacgaaa
gacatggacgaccctccagcggaaaccaacctgaccgaggtgaaggccagctcgagcaac
tcggcgtccggcccggctactccgcagccgcccaagcgtgacccggagatgatgccgttg
aagtacgccaccatgaccgatctggacgacgacatcgatcgagccaacgcggatcgtgcc
ggagatgacagccaggctggcaagaccagcgacaacagcaacacgcaggaattcccccac
aagggcgacctcgaggacaacgttaccgaacaaacccatcacattgtcgtcccatcatat
tcggcttggtttgattacaactcgatccacgtcgtcgagaagcgcgccctgcccgagttc
ttcaacggcaaaaacaaatccaaaaccccggagattttcctcgcctatcgcaacttcatg
atcgacacctaccggctgaacccaaccgagtacttgacgagcaccgcttgccggcgcaat
ctggccggtgacgtgtgtgcgatcatgcgcgtccacgccttcctcgagcagtggggcctc
atcaactaccagatcgatgccgattcgcgcccaaccccgatgggacctcccccaacctcg
cacttccacgtgctgagcgacaccccgtcaggcctccaaccgctaaacccacccaaaacg
gcccaaccctcggccgccaaaaccctcctcgacctggacaaaaagggcgacaaaaaggag
gacgcacccgcaggctccgtcgacgcaatcaaatccgaacccggcgcacccggcgctctc
cccggttccgaccccagcggccagttcggcctccgcctcgaccagtacgccaagaaacca
tccgcaatgcgcaacaaaaccgccgccagcatgtcccgcgactggaccgaacaggaaaca
ctcctcctgctcgaaggcctcgaaatgtacaaggacgactggaacaaggtctgcgaacac
gtcggatcgcgcacccaggacgagtgcatcctgcacttcctccgtctcccgatcgaggat
ccctacctggaggacgacaacacctacctcggcccgctctcctaccaacctatcccgttc
agcaaggccggaaaccccattatgtcaaccgtggccttcctcgcctcggtcgtcgacccg
cgcatcgctgcaagtgcggccaaggccgccatggaagagttcgctgccatcaaggacgaa
gtgcccgcctcgatgatggacgcgcacctgaaaaatgtggaaaagtccagcttcggtgga
aagtttgacccgtacgcggggctgacgaccagcggaatcgccggcaccggcaccgacaag
gacaaggaggaagaggagggaaagacggcgggaggagcgacgacgcaggcgggatcatcg
ggggccgctccggtgacgcccggtggcgatgtggagatgaaggatgtcaccaagaaggag
gacgcaggaagtgacccgtccaagccggccgaagcaggtgcggatcccgccgccggagac
aagaccaaggacaaggacgcagagtcgacagcggtggtcgcggtcgccaaggagaacggc
gacccgaaggtgttcaacgagggaaatctgcagtcggctgctgctgctgccctggccgcg
gccgccgtcaaggcgaaacatctggccgccgttgaggagcgcaaaatcaagagtctggtc
gcgctgctcgttgaaacgcagatgaaaaagttggagatcaagttgcgccactttgaggag
ctcgaaacgacgatggaacgggaacgggaaggtctggagtaccagcggcagcagctgatt
caggagcggcaacagttccacctggaacagctgaaggcggccgagttccgcgcacgccag
caagctcaccagcgattccagatggaacagggccagtggcagcagccgccgccgatgggc
gttggtccgggtgtgcctcctccgccaggtggaattccagccgcacaacagcagcaaccc
cagggaccaccgggacagggtccaatgccgacccccggaactaaccctcagcagcagcca
ccagtgccgtctaccggtggacaccctggaccggttccaccgaacatctcggcaccagcg
cagcagcagcagcagccgcagcaactgcagccacccagcagcaacggagttatctctgct
cctcctacttcgatgcctgtcgacgctggtactacgccaaatagcgttatgcccccgacg
gcagccccggcccaacctggaatacccccggcagtactacagcagcaacagcctccccag
tcccagcagctagcagcggcacaaccagcaccagcagcagcacaggccgctcccggaggc
gttccaccgtccagcgtcgcgggaccacccgggcctatgccgccgcaggcaccttcttcg
taa
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