Culex pipiens pallens (northern house mosquito): 120420136
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Entry
120420136 CDS
T07310
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120420136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120420136
03041 Spliceosome [BR:
cpii03041
]
120420136
03009 Ribosome biogenesis [BR:
cpii03009
]
120420136
03016 Transfer RNA biogenesis [BR:
cpii03016
]
120420136
Enzymes [BR:
cpii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120420136
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120420136
Spliceosome [BR:
cpii03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120420136
Complex C
U4/U6.U5 tri-SnRNP related factors
120420136
Ribosome biogenesis [BR:
cpii03009
]
Eukaryotic type
Pre-60S particles
Helicases
120420136
Transfer RNA biogenesis [BR:
cpii03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120420136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
AAA_22
ATPase_2
Motif
Other DBs
NCBI-GeneID:
120420136
NCBI-ProteinID:
XP_039439025
LinkDB
All DBs
Position
2:complement(73802834..73806248)
Genome browser
AA seq
1045 aa
AA seq
DB search
MAAVDDLFNLFDAENEEEDDGGSVPIVVPEDKPGKIEVDDDGDEGAVKEAEPVATKRELE
KIEVDDDDDDDVEEVEPCKKAKIVESLLDDINLDNIESRIKVHTIQSPEACTHEVAVYPD
HKYMPLVAPTGKPAKEYQFVLDPFQKEAILCIENQQSVLVSAHTSAGKTVVAEYAIAKSL
AEKQRVIYTTPIKALSNQKYREFHEEFKDVGLVTGDVTINPSASCLIMTTEILRNMLYRG
SEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCHI
HKQPCHVVYTDYRPTPLQHYLFPVGGDGIHLVVDEKGTFKEDNFNTAMAVLQNAGEAAKG
DQKGKKGGLKATNSGETNIFKIVKMIMERNFAPVIIFSFSKKDCEIYAMQMSKLDFNSTT
EKKLVDEVFNNAMDVLSEEDRQLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGEGL
IKALFATETFAMGLNMPARTVLFTGPRKFDGKDFRWVTSGEYIQMSGRAGRRGLDDKGIV
ILMIDEAVSPAVGKEIVQGKPDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQ
SSIPEIYKKVQRKQKELEGVHIKDEQSIMTYHNVREQLDTLGKQFRDYITRPTYLVPFLQ
PGRMIKIKSDAGEFEWGIIVNFKKETVDAKANPLKSETKVIIDVLLHVDDGFEKEGIPKP
CPPSKRGSVEVVPVLHSLVHRISSLRVYYPNDLRPADNRRSVLKTINEVKKRFPAGPPLL
NPINDMHIKEKDFQDTVDLIDKFEKRLFAHPLHDSPELDKLYTKYMGKLEIERALKQEKN
SLREAKSLLHMDELKHRKRVLRRLGYCTTADVIEFKGRVACELSCADELLLTEMIFNGTF
TNLTTAQACALLSCFVCDEKSTELPAATEELSGPLRQMQDLARRIAKVSNECKVELDEER
YVESFKPFLMDVVLAWCKGSSFLQLCKMTDIFEGSIIRCMRRLEELLRQMVQASKTIGNT
DLENKFADAIRLLKRDIVFAASLYL
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgtcgacgatctgttcaacctgtttgacgccgagaacgaggaggaggacgac
ggcggaagcgttccgatcgttgttccggaagataagccgggcaagattgaggtggacgac
gacggcgatgagggtgcggtgaaggaggcggaaccggtggccacaaagcgggagctggag
aagattgaagtcgacgacgacgatgatgacgatgtggaggaggtggagccgtgtaaaaag
gcgaagattgttgagtcgttgctggacgatataaacttggacaacatcgagtctcggatt
aaggtgcacacgattcagtcgccggaggcgtgcacgcacgaggtggccgtctatccggac
cacaagtacatgccgctggtggcgccgacggggaaacccgccaaggagtaccagtttgtg
ctggatccgttccagaaggaggcgattttgtgcattgagaatcagcagtcggtgctggtg
tcggcgcacacttcggcgggaaagacggtggtggcggagtacgcgattgccaagtcgctg
gcggagaagcagcgggtcatttacacgacgccgatcaaggcgttgtcgaaccagaagtac
cgggagtttcacgaggagtttaaggacgtggggttggtgacgggggatgtgacgatcaat
ccgtcggcgtcgtgcctgattatgacgacggagattctgcggaacatgctgtaccggggg
tcggagattatgcgggaggttggttgggtcgtgtttgacgagattcactacatgagggac
aaggagcggggcgtggtttgggaggaaacgttgattctgctgccggacaacgtgcattac
gtgtttttgtcggcgacgattccgaacgcgcgccagttcgccgagtgggtttgccacatc
cacaagcagccgtgccacgtggtctacacggactatcggccgacgccgctgcagcactat
ttgttcccggtcgggggcgacggaattcatctggtcgtggacgagaagggaaccttcaag
gaggacaactttaacacggcgatggcggtgctgcagaacgccggggaagctgccaagggc
gatcagaagggcaaaaagggtgggttgaaggcgaccaactcgggcgaaaccaacatcttc
aagatcgtcaagatgatcatggagcgcaactttgccccggtcatcatcttttcgttcagc
aaaaaggactgcgaaatctacgcgatgcaaatgtccaagctggacttcaactccaccacc
gagaagaagctggtcgacgaagtgttcaacaacgcgatggacgtgctcagcgaggaggat
cgccaacttccccaagtggagaacgtgctgccgctgctgcgccgcggaatcggcatccat
cacggcgggttgctcccgatcctgaaggaaaccatcgagattctgttcggtgaagggttg
atcaaggcgcttttcgcgacggagaccttcgccatgggactgaacatgccggcgcgaacg
gttctcttcaccgggccgaggaagtttgacggaaaggacttccgctgggtcacctccggc
gagtacatccagatgtccggacgagctggtcgtcgtggcctggacgacaaaggtatcgta
attctgatgattgacgaggcggtttcaccggcggtcggaaaagagattgttcagggcaaa
ccggacccgatcaactcggcgttccacttgacgtacaacatggtgctgaacctgctacga
gtcgaggaaatcaaccccgagtacatgctggagcgatcgttcttccagttccagaaccag
tcctcaatccccgaaatctacaaaaaggtccagcgcaaacagaaagagctcgaaggcgtc
cacatcaaagacgaacaatcgatcatgacgtaccacaacgtgcgcgagcagctcgacacg
ctcggcaagcagttccgcgactacatcacgaggccaacctacctggtcccgttcctccag
cccggccgcatgatcaagatcaaatcggacgccggcgagttcgagtggggcatcatcgtc
aacttcaaaaaggaaaccgtcgacgccaaagccaaccccctcaaatccgaaaccaaggtc
atcatcgacgtcctcctccacgtcgacgacggcttcgaaaaggaaggcattcccaaaccc
tgcccaccctccaagcgcggctccgtcgaagtcgtccccgtcctgcactccctcgtccac
cgcatcagctcccttcgcgtctactacccgaacgacctccgccccgccgacaaccgccgc
tccgtcctcaaaaccatcaacgaagtcaagaaacgcttccccgccggcccgcccctcctc
aaccccatcaacgacatgcacatcaaggaaaaggacttccaagacaccgtcgacctcatc
gacaagttcgagaagcgactcttcgcccaccccctccacgactcccccgaactcgacaaa
ctctacaccaagtacatgggcaagctcgagatcgaacgcgccctcaaacaggaaaagaac
tcccttcgcgaagccaagtccctcctccacatggacgaactcaagcaccgcaagcgcgtc
ctccgccgactcggctactgcaccaccgccgacgtcatcgagttcaaaggtcgcgtcgcg
tgcgaactcagctgcgccgacgaactgctcctaaccgaaatgatcttcaacggaaccttc
accaacctcaccacagcccaagcgtgcgccctgctctcctgcttcgtgtgcgacgaaaag
agcacggaactccccgcagccacggaagaactgtccggcccgctccgccagatgcaggac
ctcgcgcggcgaatcgccaaagtgtccaacgagtgcaaggtcgagctggacgaggaacgc
tacgtggaatcgttcaagccattcctcatggacgtcgtgctcgcgtggtgcaaaggttcg
tccttcctacaactctgcaagatgacggacatctttgaggggtcgatcattcggtgtatg
aggcggctcgaggagttgctgcggcagatggtacaggcctccaagacgatcggcaatacg
gacctggagaacaagtttgccgacgcgatacggctgctgaagagggacattgtgtttgcg
gcgtcgttgtatttgtaa
DBGET
integrated database retrieval system
