Culex pipiens pallens (northern house mosquito): 120420360
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Entry
120420360 CDS
T07310
Name
(RefSeq) putative mediator of RNA polymerase II transcription subunit 26 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120420360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpii03000
]
120420360
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120420360
04121 Ubiquitin system [BR:
cpii04121
]
120420360
Enzymes [BR:
cpii01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120420360
Transcription factors [BR:
cpii03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
120420360
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120420360
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
120420360
Ubiquitin system [BR:
cpii04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120420360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-C3HC4_2
zf-UDP
Motif
Other DBs
NCBI-GeneID:
120420360
NCBI-ProteinID:
XP_039439298
LinkDB
All DBs
Position
2:complement(40935649..40984340)
Genome browser
AA seq
1349 aa
AA seq
DB search
MNVMNNSSGDEEQAECPLCMEPLEVDDLNFYPCTCGYQICRFCWHRIRTDENELCPACRK
AYPENPADFTPLSQEQIAAFKAEKRQRDQQRKAKISENRKHLANVRVVQKNLVFVVGLPP
RLADPEILKKHEYFGKYGKIHKVVINPSTTYAGGPSASAYVTYINNNDALKAIQSVNNIM
IDGRLIKTSLGTTKYCSHFMKNQSCPKPDCMYLHELGDQEASFTKEEMHQGKHQEYEKRL
HDTMQAQLGLTPSSGGTGTSNGTTAPLAASNGSASGGVGNGNVSGGGGGTGTTTNGIIAN
GTAGGGGSGKTGDSKHISDITNGPIQCKEAWPSLSTSPIDGSTHGGGGSNKENKINGKTG
GSNKENGSTRKHEKSRSKGGRKHRNNGRDGADRGGDRLGKDGGGKQNSNRHGKDSTIAGA
SAAGSRTTSSGSASSVAATVPSSLVNGKTSVAAIVAGASAATNAASAAAAVAGTEPALTN
GDAEKEVPSKKALLINGLNGNGVKSVHLNDLLDDDDDDELDFEDLDNDALSSDNDGKTDT
PSLSSSGSSHAGGDSGSTLSETPSGKSSPSAFPDPMTGAGAVNNVITTGSTTTAPTTSTS
SSISPPSAEEVPPVDSTAAVAAMTNVPSSSSPAITNGISSSSSSILSSLASDDKQQASSE
HVIPSSASLFGQDGSNMTTTTAPMSTGSKQQQPLNGMAKINSVLDNATSRFSKLGFFDDN
SSFFSHSTFDPYSFTAAAANKLDQAPSTNLDGIQSSGLTSSQLPDLLSGTNDTNEQHTKE
ILKNLGNLQQQQHQQQQQQQQHHLLNNVHLQQQLNGLGLGNASNGGVDGLAGLGTGNTDD
WEAAFSKYVMRSKLDVEHHEELMRMQELQKRNLINTGLSSTQFNGFNGEYSDYFHNTNEL
NSRLLSQQQQQAHQRLQQQQQQQQHTDMSHIYAGNMSKFFDFHKSQQQAAQQQQQSQPPA
GAGPQPPFLQHNGHSALGAADPMSNIANLLENSRLNSHFLEQHTNGLLGPQLQKQRMLNG
QLNAHSILLNGASPQQQQQQQQQQQYPQQPNPVVDDDLGFDPFFETQKALAELINDEINQ
QQINPQNASPAAAAAAAAAAAAAAANHNHKLLENVQRTRMPPPGFNHMNAFGFGVPRAQV
SGSKILPFMNLANNAQQQQQQQPGQANWGQQLQQQQQQQFMGFPNEQTHLGQSQPQNGHN
KAGYGNNFPDWTSFDPAIVSFRQFSFMNGPNQQQPQPPPQQPGDLFLSAQQQNMQQPGQG
FGHHGINLQQQQQPGNPQAQVNFSASHWLNSEQSAYMSHLALNGFGAGPAAGPTGGNGFD
KFSIPMPPGFQAAAAAAAAVNKQKAECIN
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtgatgaacaacagtagcggggacgaggaacaggccgagtgcccactgtgcatg
gaaccgctagaagtagatgacctcaacttctacccgtgtacatgtggctaccagatctgc
cggttctgctggcaccggatccgcaccgacgagaacgagctgtgcccggcgtgccggaag
gcgtacccggagaacccggccgacttcacgcccctgtcgcaggagcagattgcggcgttc
aaggcggagaagcggcaacgggaccagcagcggaaggcgaaaatctccgaaaaccggaag
cacctggcgaacgtgcgggtggtgcagaagaacctggtctttgtcgtcgggctgccgccg
agactggccgaccccgagatcctgaaaaagcacgaatactttggaaagtacggcaagatc
cataaagttgtaatcaatcctagtacaacgtacgcaggaggcccgtcggcgtccgcgtac
gtaacgtacattaacaacaacgacgcgctgaaggccattcagagcgtcaacaacattatg
atcgacgggcggctgatcaagacgagcttaggtacgaccaagtactgtagtcacttcatg
aagaaccagtcgtgtccgaagccggactgcatgtatctgcacgagctgggcgaccaggag
gctagctttacgaaggaggagatgcaccagggcaagcatcaggagtacgagaagcgactc
cacgatacgatgcaggcgcagctcggcctaacgccgtcgtccggcggtacgggaacgtcc
aacggaacgacggcgccgctggccgcgtccaatggcagcgccagtggtggtgtcgggaat
ggcaacgtcagcggcggcggcggcggaaccggcaccaccacgaacggtattattgcaaac
ggtacggcgggcggaggcggcagtggcaaaacaggtgattctaaacatataagcgacata
accaatggaccaatccaatgcaaagaagcgtggccaagcttatccacttcgccgatcgac
ggtagcactcatggaggcggcggtagcaataaggagaataagattaacggtaaaacagga
ggcagcaacaaggagaatggtagcacgcggaagcacgaaaaatcccggtctaagggtggt
cggaaacaccggaacaatggccgggacggagcggaccgcggtggggaccgacttggcaaa
gacggcggcggcaagcagaattccaaccggcatggcaaggatagtacaattgcgggggcg
tcagcggcgggtagcaggacgacgtcgtcgggttcggcgtcgagtgtcgcggcaacggtg
ccgagttcactggtgaacggtaagacttcggtggcggccattgtggccggggctagtgcc
gcaacgaacgctgcaagtgccgcagctgcagtggccggaacggaacctgcgctaacgaac
ggtgacgctgagaaggaggtcccgagcaagaaggcactgctgatcaacgggttgaacggc
aacggggttaaatcggtgcacctgaacgatctgctggacgacgacgacgatgacgagctg
gactttgaggatctggacaacgatgcgctttcgtcggacaacgatggcaaaacggacaca
ccctcgctgagcagcagtggctcgtcgcacgccggcggagacagtggcagcacgctgagc
gaaacgcccagtggtaagagctcgcccagtgcattccccgacccgatgaccggagccggt
gctgtgaacaatgtgataacgactggtagcaccacaacggcgcctaccactagtaccagt
agcagcatcagcccaccatcggccgaggaggtgccacctgtcgattccaccgccgcagtc
gcagccatgacgaatgtccccagcagtagcagccccgccatcaccaatggtattagtagc
agtagtagcagcattctctcctcccttgcatcggacgacaaacagcaggctagttccgag
cacgtgataccgtcgtccgcgtccctgtttggccaggatggctccaacatgaccactacg
accgctccgatgtccacgggaagcaaacaacagcaaccgctcaacggcatggccaagatc
aacagcgtgctcgacaacgccacgtcgcggttctccaagctgggtttcttcgatgacaac
agcagcttcttctcgcacagcacgttcgatccgtacagtttcaccgccgccgccgccaac
aagctggaccaggcgcccagcaccaatctggatggaatccagtcgagtggactgacgtcc
tctcagctgccggatctcctcagcggtaccaacgataccaacgagcagcacacaaaggag
atcctcaaaaacctgggcaatcttcagcaacagcagcatcagcaacaacaacaacagcaa
cagcatcacctgctcaacaacgtacacctgcagcaacagctgaacgggctcggtctgggc
aacgccagcaacggtggcgtcgatggcctcgcaggtctgggcaccggcaataccgacgac
tgggaggccgcattcagcaagtacgttatgcgctccaaactggacgttgaacatcacgag
gaactgatgcgcatgcaggaactgcagaagcgaaacctcatcaacaccggactgagctcg
acccaattcaatggctttaacggagaatactccgactactttcacaacacgaacgagcta
aacagcaggttactgagccaacaacagcagcaagctcaccaacgtttacagcaacagcag
cagcagcaacaacacaccgacatgagccacatctacgccggcaacatgtccaagttcttc
gactttcacaaaagccaacaacaggccgcgcagcagcagcagcaaagccaaccaccggcc
ggggccggcccgcagccacctttcctgcagcacaacggacactcggcgctcggggcagcg
gatccgatgagcaacatcgccaatctgctcgaaaacagccggttaaactcccacttccta
gaacaacacaccaatggtttgctagggccacagctgcagaagcagcgcatgctcaacggc
cagctgaatgctcatagtatcctgttgaacggggctagtccacagcagcagcagcaacaa
cagcaacagcagcagtatccgcagcagccgaatccagtcgtagacgacgatttgggcttc
gatccgttcttcgagacacagaaggccctggccgagctgatcaacgacgagatcaaccag
cagcagatcaacccacagaacgcgtccccggcggcggcagcggcagcggctgcagcagca
gcagcggccgcggccaaccacaaccacaaactgctggagaatgtccagcggactcggatg
ccgccgccgggcttcaaccacatgaacgcgttcggatttggcgtcccgagggcgcaagtt
tcaggcagcaaaatcctacccttcatgaacctagcaaacaatgcacagcagcagcagcag
caacagcccgggcaggctaactggggccagcagttgcagcagcagcaacagcagcaattt
atgggattcccgaatgagcagactcatttgggccagtcccagccgcagaacggacacaac
aaagccggctacggcaacaacttccccgactggacctcgttcgatccagctatcgtctcg
tttcgtcaattttccttcatgaacggtcccaaccagcagcagccgcagccaccaccgcag
caacccggagatctcttcctctcagcacagcagcagaacatgcagcaacccggacaagga
tttggacatcacggcatcaacctgcagcagcaacagcagccgggcaatccgcaagcacag
gtcaacttttccgcgtcacactggctcaacagcgaacagagcgcctacatgagccacctg
gccctcaacggattcggggcgggaccggcagcgggtccgaccggcggaaacgggttcgac
aagttcagcatcccgatgccaccgggtttccaggcggcggccgcggcagcagcagcagtc
aacaagcaaaaggccgaatgcatcaactaa
DBGET
integrated database retrieval system
