Culex pipiens pallens (northern house mosquito): 120420404
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Entry
120420404 CDS
T07310
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03013
Nucleocytoplasmic transport
cpii03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120420404
03015 mRNA surveillance pathway
120420404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120420404
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120420404
mRNA cycle factors
P-body specific factors
120420404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1830
Rota_NSP4
Motif
Other DBs
NCBI-GeneID:
120420404
NCBI-ProteinID:
XP_039439350
LinkDB
All DBs
Position
1:complement(59033197..59054143)
Genome browser
AA seq
1139 aa
AA seq
DB search
METAAQPDPAQSEELPAEEESREQERKELEGFVAEQAAKFEQKAALRSQNVAPERPPESF
FTRCDSSLKKNTAFVKKLKQFTASQLEGLLKDMAGLNLTKYISEVSAAIVEAKLKMSDVG
PALTLCSKLHQTYGDFAGSLFENWQKVLHVKAGEKIGNPSKMRVDLRFYGELISVGIFTN
KVGLPLLGLCLTALISQDKEEHSNLSIILSFCRHCGDEYAGLVPKKMLELAKKHSVTVPS
SNLLPSDKQQNLRNLLKDYYQTLFEHLKNEHKQLQYAEKSRRRMLESKGEVSNDKKEQIE
MLQNNYEKLLSSTQTMADLLNESLPELTVEVEVCPTEGTVIDNIGDEQFANLDPWGDEDT
RNFYVNLPDLRQFLPNYCGKKEEILPDEPAITEEVLDMEEVEPDTEAEVELPPELAEAAA
VDVDAEEPTTAPSTPHHHANREYFEAFIANMQNCVNTELIDSAAIDFLLNLNTKNNRKRI
VKTLFGVQRTRLDLLPMYARFVAIVNLVSPDVAVDLSQMLKVDFKYQIKKKDQINIETKI
KVVRYIGELVKFGIYNKIEALFCLKCLLHNFQHHHIEMTCAFLEVCGVYLYNCRDTRLRT
NVYLEQMMRLKTNTTMDSRHAQQVDTAYYLVKQPEGMRIQRKIRPLIHTYIRHLVFEELN
KANVDKMIKLLRRLNWEDRDTHDYAVKCLAKAYSIRYHLIRSLADLVSGLSSYQEKAVVK
VIDAVFEDIRAGLEIHDTKLAQRRIAMAKYLGELYNYRLVESGNVLNTLYSIISLGVSFS
HEVPSEVDPPGSLFRLKLVCVLLDTCGQYFTSASSRKRLDYFLIFFQNYYWFKKSDPIFT
SDTEKDLFPILIDHMYKECFKNLRPKLKLYTSYDVAKEAVEAIRKKLYPDLFNAKDDDTG
TTGGLKPIQETDTDKDDTVTEDCTSEAFGDSEDDDEDDGKPRTARDEDDEELGDDDDDED
DDLNADLEALAKPAAPEKTFEDMEFEKEFERMATESFLERLKEPAKVNTKDIPVPITMRS
SGTKKTYEQLQDKDKDKSDSVPFVLMVRGKGKQQQYKTFEAPSDSQLAIYLKDQEQKIKE
ENDSVKRLTLNITERLEEEDYQESLLQSQRSPASNKIRIAKPPKFKHPKGAPDVDAIFH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atggagactgcagcacaaccggatccggcgcagtcggaagaactgccggcggaagaggag
tcgcgcgagcaggaacggaaggagctggagggtttcgtcgccgagcaggcggccaaattc
gagcagaaagcggcactgcggtcgcagaatgtagctccggaacggccaccggagtcgttc
tttacccggtgtgactcgagcttgaagaagaacacggcgttcgtgaagaagttgaagcaa
tttactgcgtctcagctggagggattgctaaaggacatggccgggttgaatttgaccaag
tatatctcggaggtcagcgcggcgatcgtggaagctaagctgaagatgagcgatgtgggt
ccagcgttgacgctgtgcagcaagttgcaccagacgtacggggatttcgccggaagtttg
ttcgagaattggcaaaaagtgctgcacgtgaaggccggagagaagatcggaaatccgagc
aagatgagggtggacttgcggttctacggggagttgatcagcgtggggatctttacgaac
aaagtcgggctgccgctgctggggctttgcttgacagcgttgatttcccaggacaaggag
gagcacagcaacttgtcgattattttgtccttttgtcgtcactgtggcgatgaatatgcc
gggcttgttccgaaaaagatgttggagctggccaaaaagcactcggtgacggttcctagc
tcaaacttgctgcccagtgataagcagcagaatttgcggaacttgctcaaagattattac
caaacgttgttcgaacacctgaagaacgaacacaaacagttgcagtatgcggaaaagtcc
cgccggaggatgctggaatcgaagggagaggtgtccaacgacaagaaggagcaaatcgaa
atgctgcaaaacaattacgaaaagctgctctcctcgacgcaaacgatggccgatttgctg
aacgagagccttccggaactcacggtcgaggtggaagtctgtccaaccgaaggcaccgta
atcgacaacatcggcgacgagcagtttgccaacctggatccgtggggcgacgaagacacg
cgcaatttttacgttaacctacccgatttgcgtcaatttctacccaactattgtggcaaa
aaagaagaaatacttccggacgaaccggcaattacggaggaagtgctggacatggaggaa
gtcgaaccggacaccgaagccgaagtcgaacttccgccggaactggccgaagccgcagct
gtcgacgtggacgccgaggaaccgacgacggcgccgagcacgccgcatcaccacgcaaac
cgcgagtactttgaggcgttcattgccaacatgcaaaattgcgtcaacaccgagctgatc
gattcggccgcgatcgactttttgctgaacttgaacacgaaaaacaaccgcaaacggatc
gtgaagacgctgtttggcgtgcagcggacgcggttggatctgctgccgatgtacgcgcgt
tttgtggcgatcgtgaatttggtgtcaccggatgtggccgtcgatttgagccagatgttg
aaggtggacttcaagtatcagatcaagaaaaaggaccagatcaacattgagaccaagatc
aaggtggtgcggtacatcggagagttggtcaagtttgggatctacaacaagattgaggcg
ctgttttgtttgaagtgtttactgcacaattttcagcaccatcacatcgaaatgacgtgc
gcgtttctggaggtttgcggcgtttacttgtacaattgcagagatacccgcctccgcacg
aacgtctacctcgagcagatgatgcggctcaagaccaacaccacgatggacagccgacac
gcccagcaggtagacacggcctattatctggtgaagcagcccgagggaatgcgaatccag
cgcaagattcgtcccttgatacacacctacatccggcacttggtgtttgaggagcttaac
aaagccaacgtggacaagatgataaagctgctgcggcggttgaactgggaggaccgcgat
acgcacgactacgcagtcaagtgcctggccaaggcgtacagcatccggtaccacttgatc
cgaagtttggccgatttggtttccgggttgagctcgtaccaggagaaggcggtggtgaag
gtgatcgacgccgtgtttgaggacatccgggcggggttggagattcacgacacaaagttg
gcccagcgacggatcgcgatggccaagtatttgggcgagttgtacaactaccggctggta
gagtcggggaacgtgctgaacacgctgtactcgatcatatcgttgggcgtaagcttcagt
cacgaagttccgtcggaggtggatcctccgggcagtctgttccggctgaagctggtgtgc
gtacttttggacacctgcgggcagtactttaccagcgcttccagcagaaaaaggttggac
tatttcttgatcttcttccagaactattactggttcaaaaagtcggatccgatctttacc
agcgataccgaaaaagatctcttcccaatactgatcgatcacatgtacaaggagtgcttc
aagaacttacgacccaaactaaagctctacaccagctacgacgtggcgaaagaagccgtc
gaagccatccgcaagaaactgtacccggatttgttcaacgcgaaggatgacgacacgggc
acaacgggcgggctgaagccaatccaggagacggacaccgacaaggacgacacggtgacg
gaagattgcacgtccgaggcgttcggtgactcggaagacgacgacgaagatgacggcaag
cctcggaccgcgcgtgacgaggatgatgaagagctcggcgatgatgacgacgatgaggat
gatgacttgaacgcggatctggaagcgttggcaaagccggcagcgccggagaagaccttc
gaggacatggagtttgagaaggaatttgagcgaatggcgacggaaagtttcctggagcgg
ctgaaggaaccggccaaggttaacaccaaggacattcccgtgccgatcacgatgaggagc
agtggaacgaagaaaacctacgagcagttgcaggacaaggacaaggacaagtccgactcg
gtgccgttcgtgctgatggtgcgcggcaagggcaaacagcagcagtacaagacgttcgag
gcgcccagcgacagccagctggcgatctatctcaaagatcaggagcagaagatcaaggag
gaaaacgacagcgtcaaacggctcacgctcaacattaccgagcgcctcgaagaggaagac
taccaggaatcgctgctgcagagtcagcgatcgccggcgagcaacaagatccggatagcg
aaaccgcccaagtttaagcatccgaaaggggcgccggacgtggatgcaatctttcattga
DBGET
integrated database retrieval system
