Culex pipiens pallens (northern house mosquito): 120422559
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Entry
120422559 CDS
T07310
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120422559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120422559
03032 DNA replication proteins [BR:
cpii03032
]
120422559
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
120422559
mRNA cycle factors
Common to processing body (P body) and stress granule
120422559
DNA replication proteins [BR:
cpii03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
120422559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
120422559
NCBI-ProteinID:
XP_039441979
LinkDB
All DBs
Position
2:complement(72365494..72379499)
Genome browser
AA seq
1098 aa
AA seq
DB search
MEYSSNDVKQMFRSVYTLVKQQDERKGALTLATLATEPAFLEEHRQLVARCVTLLFEDFE
TVGKKAREILWRKGYYDLITVFKKHAQQLAQQRKSALRGEELARVAADEVLLRQGVERLL
LDGVNHLKVIVLRLGQIFNLDRLRYVVSYELLENYDDELLVRESSCYENLNLKEERSEEE
KKVIYTKQEISFALESVHALLTSLGDLHRYYCEFGLDGLSNVKEVTASYYWEAFKLNTKV
GITQNQLGTLYNGRNYNLDSVYHYLYSLCCPIPFECSEPNVSRIFQKNIRYLESNGGADV
EEEDYAVREFMAKFLLVVDVFFYDKSVSDFTSLCHSVLIDFKNVLGARRLVDDEYYMTDE
FIFKIVSILFFCMYRLQLNSSEKIYSLNAFMVALCSELLEYCTMAVEKYVVENVREDKKF
RELYTAMYQRYDDEVRRSRQMVKDGTSGGIFTKDQKSSSGVEEGNGSEDHSNKENDERKS
QASSGKQGGGLKKKHARRRRRAMSNESESELSDDTSDCQLDSDSGEDDDDEEDDDGDSIS
SFESYDDFSDEEDEVEQRNESFGERNGNEPVELQSAEEANNNLDQNQTASVQLKFKKRYH
KLNPNVVIEFAEQERTMRSLKLLFDWLQTNLDILVGCYQSNPEFLHNIMKLLNHFNIDIF
SNRYFFPRELITAPAIREDFRQLFEARRGIPLQEDIAMKRFPLFDAAQEGLDWETNYRLG
VTPSEQSFLRVMKLVDFGFSLCKSKKFEYAFCPKSRDFSLKSTKQTKQQQRGGKREELNR
RVVGGPKEMGTNRAARRREQQEEKRRAKKLVQREERGQREREPRTRRNRNRQNAGRVGGL
GSGGEGQRSSQEGEGKFAAPAIITKKGYLKNRGLTLRNRKEPADSGHSESTADEGGVVAG
QRGEEKNINELMGQLWLRDEVKKLETKVKREVKNITLTPYLMLDSACLTEYTSIVKNLVK
TKKFVILIPTAVLSDLDELKKHSEGARNAIKWLEFELSKGNRFLRSQKSHEVLPMPLIRV
PKKLDRDGALFHQIVQFCNHLVSNHADQESGPADIITYLSGDSLHDKKLYNSSYVGILEA
IPVKFEQIVTFYASYKRK
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggaatattctagcaacgatgtgaagcagatgttcagatcggtgtacacgctggtcaag
cagcaggacgagcgcaagggcgcgctcacgctggccacgctggcgaccgagccggccttc
ctggaggagcaccgccagctggtggcccgctgcgtgacgctgctgttcgaggactttgag
acggtgggcaagaaggcgcgggagattctgtggcgcaagggttactacgacctgattacg
gtgttcaagaagcacgcccagcagctggcgcagcagaggaagtcggcgcttcgaggggag
gagttggcgcgggttgcggcggacgaggtgttactgcggcagggcgttgagcggttgctg
ctggacggggttaatcatttgaaggtgattgtgctgcggctggggcagatatttaatctg
gatcggctgcggtatgttgtgagctacgagctgctggagaattatgatgatgagctgttg
gtgcgggagtcgagttgctatgagaatttgaacttgaaggaggaacggagcgaggaggag
aagaaggtgatttacaccaagcaggagatttcgtttgcgctggagtcggtgcacgcgttg
ctgacttcgttgggcgatttgcaccggtactattgcgagtttgggttggacgggttgagc
aacgttaaggaggtgacggcgagttactactgggaggcgttcaagctgaatacgaaggtt
gggataacgcagaaccagctggggacgctgtacaacgggaggaactacaacctggactcg
gtgtatcattatttgtactcgctgtgctgtccgattccgttcgagtgcagcgagccgaac
gtgagcagaatcttccagaaaaacattcgctatctggagtcgaatggcggggcggacgta
gaggaggaggactacgccgtgcgggagtttatggcaaaatttttgctggtcgttgacgtg
ttcttctacgataagagtgtgagcgactttacgagcttgtgccactcggtgttgatcgat
ttcaagaatgtgctgggggcgcgtcgccttgtagacgacgagtactacatgacggacgag
ttcatcttcaagatcgtgtcgattctgttcttctgcatgtaccggctgcagctgaacagt
tcggagaagatttacagcttgaacgcgttcatggtggcgctgtgctcggaactgctcgag
tactgcacgatggcggtggagaagtacgtggtggagaacgtccgcgaggataagaagttc
cgcgagctgtacacggccatgtaccagcggtacgacgacgaggttcgccggtctcggcag
atggtgaaggacggcacgtccggggggatcttcaccaaggatcagaagtcttcttcgggt
gtggaggagggaaatgggagcgaggatcattccaacaaggagaacgacgagcgcaagagt
caggccagttcgggcaagcagggtggaggcttgaagaagaagcacgctcgcagacgccgt
cgtgccatgtcgaacgagtccgagtcggagttgtcggacgataccagcgactgccagctt
gattcggattccggcgaggacgatgacgacgaggaggacgacgacggtgattctatttcg
agcttcgagtcgtacgacgatttctccgacgaagaggacgaagttgagcagcggaatgag
tcgttcggtgagcgtaacggaaacgaaccggttgagttgcaaagcgccgaggaggcgaac
aacaatctggaccagaaccaaaccgcttccgttcagctcaagttcaagaagcgctaccac
aagctgaacccgaacgtggtgattgagtttgccgagcaggagcgaacgatgcgttcgctc
aaactcctgttcgactggctgcaaaccaacctggacatcctggtcgggtgctaccagtcc
aacccggagttcctgcataacatcatgaagctcctgaaccacttcaacatcgacatcttc
tccaaccgctacttcttcccgcgcgagctcatcaccgcgcccgccattcgcgaggacttc
cgccagctgtttgaggcccggcgcggtatcccgctccaggaagacatcgccatgaagcgg
ttcccgctgttcgacgcggcccaggaagggcttgactgggaaaccaactaccgcttgggc
gtgactccgtcggagcagagcttcctgcgcgtcatgaagctggtcgactttggcttttcg
ctgtgcaagtcgaagaagtttgagtacgcgttctgtcccaagtcgcgcgacttcagcctg
aagagcaccaagcagacgaagcagcagcagcgcggcggcaagagggaggagttgaatagg
cgggtcgttggagggccgaaggagatggggacgaaccgcgcggcgcgtcgtcgtgagcag
caggaggagaagcgtcgcgccaagaagttggtgcagcgggaggaacgtggacagcgggag
cgtgagcccaggacgcgtcgcaatcgtaaccggcagaacgctggaagagttggcgggttg
ggatccggtggtgaaggtcagcgttcgagccaggaaggtgagggcaagtttgcagcgcca
gcgattatcaccaagaagggctacctgaagaaccgcggattgacgctgcgcaaccggaag
gagccggcggactcgggccactcggagagcacggccgacgagggtggagttgtcgctgga
cagcgcggcgaggagaagaacatcaacgagctgatgggacagctttggctgcgcgacgag
gtgaagaagctggagaccaaggtgaagcgggaggtcaaaaacattacgctcacgccgtat
ctgatgctggactccgcttgtctgaccgagtacacgtccatcgtgaagaacctggtcaag
acgaagaagtttgtcatactgattccgacggcggttctttccgacttggacgagctgaag
aagcacagcgagggagctcgcaacgccatcaagtggctcgagttcgagttgagcaagggc
aaccggttcctgcgctcccagaagagccacgaggtgctgccaatgccgttgatccgcgtc
ccgaagaagcttgaccgcgacggcgccctcttccaccagatcgtgcagttctgcaaccac
ctggtgtcgaaccacgccgaccaggagagcggccccgccgacatcatcacgtacctgtcg
ggcgactcgctgcacgacaagaagctgtacaactcgagctacgtcggcatcctggaggcg
atcccggtcaagtttgagcagatcgtcacgttctacgcgagctacaaacgcaaatga
DBGET
integrated database retrieval system
