Culex pipiens pallens (northern house mosquito): 120423213
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Entry
120423213 CDS
T07310
Name
(RefSeq) probable DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120423213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpii03400
]
120423213
DNA repair and recombination proteins [BR:
cpii03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120423213
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
120423213
NCBI-ProteinID:
XP_039442853
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All DBs
Position
3:185946120..185957913
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AA seq
1130 aa
AA seq
DB search
MSKNKDKLNTSSNTLFNYFAKSPATTPKLKPSSSGGAGTPKTVKQEKVTPSPARKESVVP
EKVPKDEEDEEEVQPMKKRRRIIMDESEDDGDDDSENKVKNEKTPPKVVQLAAFKRVETP
KNGGESPVQKKIKLEVGVEAAKELPAAKEDDDDGPVLEEPTIWLHQKLDFLKPDKIKDIQ
GNKANSEKYDPRTLFVPESYLATLTPAMRQWWELKSRHYDCVLFFKVGKFYELYHMDASV
GVKELGFSYMKGEFAHSGFPEQAYERMATSLVERGYKVARVEQTETPDMMSERCKKNKTN
SKYDKVVKREICQVSLKGTEVYGQQVQMTQSADPNYMLAIAERSAGKGKSGGVRYGVCFI
DTSLGIFHLGEFDDDGQASRLLTLLSHYAPALVLHERSLVSPGIHQIFKTVLAGVRKEPL
TNESQFWSAEKTLKYLAENHYGSSSDEKSAKWPEAVRCLLDKNDHLGLTPNEDSELSLKA
LGGCIWYLKRCLLDQQIVALAKFELYIPPDDNVTRKQLKISNSNRFMVLDAITLSNLRLT
DGELSLLNRLDHCCTKFGKRLLHHWVCSPSCEREIIIQRQDAIKELVEDINLLQDVRQIL
GELPDLERMLAQIHSFGNAERMKNHPDGRAILYEEQTYSKKKIQDFICTLRGFKALTRLP
ELFAGVKSDLLIRLTQLTPKGGVFPDMASKISFFEESFDHEAALKTGVIAPEKGLDTEYD
AVQRDIQGILDELEEYKRKQEKYFGCKIDYFGSDKKRFQLEIPEGAAKKANSGYSLEGQK
KGKNGVKRYHTDETREFLKRMMQTEDQRKAVLKDLARRIFEKFSSAYDMWKTCVDLVGTL
DVLTALAEFGRSSGSTCFPEILDSDEEKGQIFELSEGIHPCVSDPENYIPNGVSLGQDGT
RLILLTGPNMGGKSTLMRQVGVLAIMAQIGAPIPAESCRLTLIDRIFTRLGANDDIMAGH
STFLVELNETSTILKHATEKSLVLLDELGRGTATYDGTSIAGAVVQFLAELKCRSMFSTH
YHNLVDNFERDERILLGHMACMVEKEDDEDPTQETVTFLYKYAPGSCPKSYGFNAAKLAG
MPPQIIKRAYELSKTVEAEALKRKTFTKSLLQADRTEVQDLLRKLKGCRL
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagaacaaagataaactaaacaccagctccaatacgctcttcaattactttgcc
aagtcacccgcaacaacgcccaagctcaaaccatcgagctcgggcggggcaggaactccg
aagacggtcaagcaggagaaagtgaccccgtcgccggcacgcaaggaatccgtggttccg
gaaaaggttcccaaagatgaggaggacgaggaagaagtgcagccgatgaagaagcgccgc
cggatcatcatggacgagtccgaggacgacggcgacgacgattccgaaaataaggtcaaa
aatgagaaaacacccccgaaggttgttcaactggccgcgttcaagcgggttgaaacgccg
aagaacggcggggaatcgccggtgcagaagaagataaagctggaggttggagtggaagca
gcgaaggagctgccggcggcgaaggaggacgacgatgatgggccggtgctggaggaaccg
acgatttggctgcatcaaaagttggactttttgaagccggacaaaattaaggacatacaa
ggaaacaaggccaacagtgaaaagtatgacccaaggactctgttcgtaccggagagctac
ctcgcaacgttgacgccggctatgcggcaatggtgggagttgaagtcgcgacactacgat
tgcgtgttgttcttcaaagttggcaaattctacgagctttaccacatggatgcctctgtc
ggggtgaaggagctgggtttttcgtacatgaagggcgagttcgcccacagtggctttccg
gagcaggcgtacgagcggatggccacatcgctggtcgaacggggctacaaggtagcccgg
gttgagcaaacggagacaccggacatgatgtcggagcggtgcaagaagaacaaaaccaac
agcaagtatgacaaggtcgtgaagcgcgagatttgccaggtgtcgctcaagggcacagaa
gtttacggccaacaggtccagatgacccaaagcgcagaccccaactacatgcttgcgatt
gcggagcgcagcgctggaaagggtaaatctggtggagtccgttacggcgtctgcttcatt
gacacttcgttgggtattttccacctcggagagtttgatgacgatggccaggcgtctcgt
ttgttgaccctgttgtcccactacgctccggcgctggttctgcacgagcgcagcttggtt
tcgccgggcatccaccagatcttcaagacggtgctggccggagtgcgcaaggaaccactc
accaacgagtcccagttttggtcggcggagaaaacgttgaaatacttggcggagaaccat
tacggcagctcgagcgacgaaaagtcggccaagtggccggaagcggtccgatgcctgctc
gacaaaaacgaccatctcggtctaacgcccaacgaagactctgagctatcactgaaggcg
ctaggcggttgcatctggtacctgaagcgctgcctgctcgaccaacaaatagttgccctg
gccaaattcgagctgtacattcccccggatgacaacgtgactcggaagcagttgaagatc
tccaacagcaaccggttcatggtgctcgatgcgattacgctgagcaacctgcgtctcacg
gatggcgagttgtcgctgctgaaccgcctggatcactgctgcacaaagtttggcaaacgg
ctgctccatcactgggtttgttctccgagctgcgagcgcgaaatcatcattcaacgccaa
gacgccatcaaagaacttgtagaggacatcaacctcctgcaggatgtccgtcaaattcta
ggagagctgccagatctcgagcgaatgctggcccaaattcacagctttggaaatgcggag
cgcatgaagaaccatccggacggccgggccatcctatacgaagagcagacgtacagcaag
aagaaaatccaagacttcatctgtaccctgcggggattcaaggccctaacccgactccca
gaactattcgctggagtcaaatccgacctcctaattcgtctgacacaactaaccccaaaa
ggcggtgtcttcccggacatggcgagcaagataagcttcttcgaggaatcgttcgaccac
gaagcggccctgaaaaccggcgtcatcgctccagaaaaaggtttggacacggagtacgat
gcggtgcagcgcgatattcagggcattctggacgagctggaggagtacaagcgcaagcag
gaaaagtattttggctgcaagatcgactactttggcagcgataagaagcggttccagctg
gagattcccgagggagcggcgaagaaagccaacagcgggtactcgctggaagggcagaaa
aagggcaaaaatggagttaagcgataccacacggacgagacgcgcgagttcctgaagcgc
atgatgcaaaccgaggaccagcggaaagccgtactgaaggacttggcccggcgtatcttc
gaaaaattctccagcgcgtacgacatgtggaagacgtgcgttgatttggtgggaacgctc
gacgtgctgactgcgctggccgagtttggacgcagctcgggtagtacgtgcttcccggag
attctggacagcgacgaggagaaagggcagattttcgagctcagcgaaggaattcacccg
tgtgtgagcgatccggaaaactacatcccgaacggagtgagtcttggccaggatgggact
cggttgatcctgttgaccgggccgaacatgggcggaaagagtacgctcatgagacaggtt
ggagtgttggcgatcatggctcagattggtgctccgattccggccgagagctgccgtttg
acgctgattgaccgcatttttacacgcttgggggcaaacgacgacatcatggctggtcac
agcacgttcctggttgagctgaacgaaacttcgacgattttgaagcacgccacggagaag
agtctggtgctgctggacgagttgggacgaggaaccgctacgtacgatggaacgtcgatc
gccggagccgtggtccagtttctggcggaactcaagtgtcgatcgatgttttccacgcat
tatcacaatttggttgataacttcgaacgggacgagcgcatcctgctggggcacatggcc
tgcatggttgagaaggaggacgacgaagatccgacccaggaaacggttacattcctgtac
aagtacgctcccggatcgtgccccaagtcgtacgggttcaacgcagccaagctggccgga
atgccaccgcagatcatcaagcgtgcatacgagctctccaaaacggtcgaggcggaagcg
cttaagcgcaaaaccttcacaaaatcgctgctccaagcggaccgcaccgaggtgcaggat
ctgctgcggaagctgaagggatgccggctctag
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