Culex pipiens pallens (northern house mosquito): 120423662
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Entry
120423662 CDS
T07310
Name
(RefSeq) collagen alpha-1(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120423662
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpii00536
]
120423662
Glycosaminoglycan binding proteins [BR:
cpii00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120423662
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
DTHCT
Motif
Other DBs
NCBI-GeneID:
120423662
NCBI-ProteinID:
XP_039443479
LinkDB
All DBs
Position
2
Genome browser
AA seq
1839 aa
AA seq
DB search
MREADARRGKPGWSGGFRQRKCYTLGGVENYRVPAASIFGGVVTVAIIAAGLFVGCEAVP
SKDGLVDFIELFGIPRLPSGITPTTGMCNETRNEYQTYPAAAYNLNQDTVLSIGTTQAFP
GGFPTDFSLLVVLKATPNLVRVPLFSVYSSDSEEVLMLMVGMEVALYYQDTDGEPEEESL
ISFGVGIDDQRWHRLGISVKGDSVTLVLDCNTQITRQLKRKPSSTIAADGLILTGMQLNE
DDGFFTGDLQMFMVANTPDEAYHICTKYAPSCAGSADYGSVHISTGVHSQSFQAGSAANS
SSSSQRQSGYESTRDQVNRQVVSSASSAAGSQSYGHREFVDLTGEADGLESIGEDDEYYN
NLELEGESKQPEHQTYSTSTQRSYEDQYRAEFNRTTSDGYDQYGRRPILPLPDPEYDSSA
TNRRQPDGEQPYEDIEPFHDPGSPGSDDSSVSFPILPSNNRSIGGVRTIVGPRGLPGEPG
PKGEPGRDGLSGQSGPPGPPGHVFMIPLSQSTNEKGPDTQAEAFRQMLSQHMMAMRGTDG
PMGLTGVPGPVGPPGPEGTKGEPGDIGEPGPRGLRGPAGLPGREGRRGRAGRDGERGLAG
LQGLKGEPGPIGLPGIPGEKGERGRIGHAGEKGAQGHEGIQGEDGPPGLPGLPGELGPRG
FTGGRGFPGPPGNPGLPGTEGLPGVKGNPGPQGQPGAPGQTGPTGPIGPPGPQGNMGPPG
IPGPHGKPGLPGLPGADGAPGREGNPGIVGPKGDQGPQGVQGSIGFPGNRGPKGDDGERG
APGDRGEKGERGHDGEKGDMGPSGERGAIGPQGITGIEGPEGPKGFEGPRGEPGAMGLSG
EKGKQGVQGFTGYPGPTGDKGDKGSVGISGLTGDKGERGNTGLQGERGEVGPRGFRGPRG
RRGADGTPGFKGDTGQPGAPGPQGEIGLQGPEGPRGFIGLPGTQGNNGKDGPQGTPGERG
PPGENGNPGPTGAPGVIGPQGQTGEPGPVGEPGIPGLPGMPGEPGVPGDTGKEGQVGPPG
PPGKNGPPGAQGLSGFPGERGMMGMPGLPGLKGEIGVPGNSGPVGDKGQPGEPGKEGPPG
PEGRRGQTGPPGSVGLKGERGDMGLMGPIGRDGLPGQRGLTGPPGPQGPPGEDGDKGDMG
PPGEKGFKGAQGEAGPTGSPGSQGSRGEPGAAGPPGEKGPPGEMGRAGGKGEDGPTGLPG
PPGASGPQGMPGPPGMKGGRGDDGPIGPAGPIGLPGEPGRRGPRGAEGGPGATGPAGPQG
LAGEPGAQGPPGPQGPEGKEGEKGSIGPKGEEGKSGPPGPPGKRGPAGAEGPKGVAGAQG
FPGNPGEPGVVGPKGDTGKDGEDGKQGEPGLSGEPGPVGLPGEMGSPGKMGPEGPAGSQG
TPGLPGEKGDRGLPGPAGNIGITGPQGMPGPQGLTGLRGSPGASGEIGPTGKSGETGPAG
KIGETGAKGQKGDRGKRGPKGHRGELGMVGLKGDMGEKGDKGSRGNQGIDGPKGPPGPVG
PLGLKGNDGPQGTPGGDGPLGPKGSEGVAGMRGDPGPPGLPGPPGPPAEAPLIPPELLFR
MSEFSITKGEDRMKREAEDIPEEEDDFDEELLKIEPKKKKKKKKIKDDLGPKFLDMYSSI
YSMRQELDRIRKPVGTRENPGRTCRDLHYGHPQFKDGWYWIDPNLGMADDAVYVFCNMTA
EGETCVFPDLHSSQMPNIPWRKENDKTDWYSNLRGGFRISYETVGVVQMTFLRILSQGAY
QNFTYTCMNSVAWFSTEENNYDNAIRFLGDNEIDLGYENSKLRPGVLMDGCKTGKSKSET
IFEIRTAKLQYLPIIDFYPVDYGQPQQAFGFQVGPVCFK
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgagagaggcagacgcaaggagaggaaaaccgggatggtccggcggattccggcagcgg
aaatgttacacacttgggggtgtggaaaattatcgagtgccggccgccagcatcttcggg
ggagttgtaacggtcgccatcattgctgctggattattcgtcggttgtgaggctgttcct
agcaaagatggactcgttgacttcatcgagctgtttgggatccctaggctaccctcgggc
atcacacccactacaggcatgtgcaacgagacccgcaacgagtaccaaacgtatccggcg
gcggcctacaacctcaaccaggacacggtgctgagcatcggcacgacccaagccttcccg
ggcggctttcctacggacttttccctgctggttgtgctgaaggccacccccaaccttgtt
cgggtaccgctgttttcggtgtactcgtccgactcggaggaggtcctgatgctgatggtc
ggcatggaagtggcgctgtactaccaagataccgacggtgaacctgaggaggagagtttg
atcagcttcggcgttggtatcgacgatcagcggtggcatcggttgggaatcagtgttaag
ggagattctgtcacgttggtattggactgtaacacccagatcactagacaactgaagagg
aaaccatcttcgacgattgccgccgatggattgattctgacgggaatgcagttgaatgaa
gatgatgggttctttacgggagatttacagatgttcatggttgcgaatacacccgatgaa
gcgtaccacatctgtactaagtatgcgcccagttgtgctggatcagcggactacggatcg
gtgcacatttctaccggagttcatagtcagtcgtttcaagctggttcagcagccaattca
tcgtcgtcttcccagcgtcaaagtggctacgaaagtacccgtgatcaggtgaacagacaa
gtggtttcaagtgcaagttctgcagcgggtagccaaagctatggtcatcgtgagtttgtt
gatttgacgggggaggccgatggactcgaaagcattggagaagatgacgaatattataac
aatctagaacttgagggtgaatcgaaacaacccgagcaccaaacctacagtacaagtacc
cagcgatcgtacgaagatcagtacagagccgagttcaaccgaacaacctctgatggctat
gatcagtacggaagaagaccaattctgccattgccagatccagagtatgattcgtcagcc
acgaacaggagacaacctgacggtgaacaaccgtacgaagacattgaacccttccacgac
ccaggttctccaggcagtgatgattcttccgtctcctttccgatattaccatcgaataac
cgaagtatcggtggtgtccgaaccattgtcggtcctaggggtttgcctggggaaccaggt
ccgaaaggagaaccaggtagagatggcttatcgggacaatcgggtcccccaggacctccg
ggacacgttttcatgatcccactgagtcaatcaactaacgaaaagggtcccgacacgcag
gcggaagcgttccgacagatgctgtcccagcacatgatggcgatgcgtggaaccgacgga
cctatgggattgacgggtgttccgggacctgtcgggcctcctgggccagagggaactaaa
ggtgagccgggagatatcggcgaaccgggacctagaggattacgtgggcctgcagggttg
ccaggaagagagggaagacgcggacgcgctggaagagacggtgaacgtgggcttgccgga
ttacagggtttgaagggagaaccgggaccgattggattaccgggcattcctggcgaaaag
ggtgaacgcggccgaattggacatgccggagaaaaaggagcccaaggtcacgaaggaatc
cagggtgaagatggccctccggggttgccaggtcttccgggagagcttggaccacgaggt
ttcactggcgggagaggatttccaggacctcctgggaaccctggcttaccgggcactgaa
ggcttaccaggagtgaagggaaatcctggccctcagggtcagccgggagcacctggacaa
acgggccctacaggaccgattggccctccaggacctcaaggaaacatgggtccacccgga
attcccggacctcacggaaagcctggtttacccggtttgccgggtgctgacggagcacca
ggtcgagagggaaatcccggaatagtgggaccgaaaggagatcaaggaccacaaggcgtt
caaggatcgatcggttttcccggaaatagaggtcccaaaggggacgacggagaacgagga
gctccgggagatcgcggagagaaaggtgaacgtggtcatgacggcgaaaagggtgacatg
ggaccgtctggcgaacgtggagcgataggaccccaaggtatcacgggcatcgagggtcca
gagggacccaagggctttgaaggacctcgtggggagcctggcgcgatgggtttgtccggg
gagaagggcaagcaaggcgttcaaggattcaccggatatcctggcccgaccggggataag
ggagacaagggttccgttggcatttctggactgacgggtgataaaggagaaaggggcaat
accggactacaaggcgaacgcggtgaagttggaccgagaggttttcgaggaccgcgtggg
cgtagaggcgcggacggaactcccggtttcaagggtgatacaggtcagccaggggcacca
ggaccacagggagagatcgggctccaaggaccagaaggaccacgtggcttcattgggtta
cccggaactcaaggcaacaacgggaaagatggcccacagggaacgcctggcgagcgggga
cctccgggtgaaaatggtaatccaggaccaacgggtgcccccggtgtcattggaccccag
ggtcaaaccggagaaccaggacccgttggtgaaccagggataccggggttacccggaatg
ccaggtgagccgggagttcctggtgataccggcaaggaaggtcaagttggacctccaggt
ccacctggtaaaaatggaccacctggagcgcaagggttgtctggtttcccgggagaacgc
ggaatgatgggaatgccgggtctacctggcctgaaaggagaaatcggcgttccgggcaat
tccgggcccgtcggtgacaaaggtcaacctggagaacccggcaaagagggacctccggga
ccagagggtcgtcgtggtcaaacgggacctccaggttctgtaggcttgaaaggggagcgt
ggtgatatgggcttgatgggacctatcggaagagatggattgccaggtcaacgagggtta
acgggacctcccgggccccaaggaccaccaggagaagacggcgataaaggagacatgggt
cctcccggtgaaaaaggcttcaaaggtgcgcagggcgaggcaggtccaactgggtcgcca
ggatcacagggaagtcgcggggaacctggagctgctggtccacccggtgaaaaggggcct
ccaggagaaatgggtcgtgccggcgggaagggtgaggacggtccaacgggattaccggga
cctcctggcgcttcggggccccaaggaatgcctggtccgcccgggatgaaaggtggtcgc
ggagatgacggaccgattgggccggcaggtcccattggtttaccaggggaaccaggtaga
agaggacctcgtggcgcagaaggaggaccaggagcgacaggtcctgcggggccgcaaggt
ttagctggtgaacctggggcacaggggcccccggggccacaaggtcccgaagggaaggaa
ggtgaaaagggatctattggaccaaaaggtgaggaaggtaagagtggaccacctggacct
cccggaaagcgtggcccagctggcgcagaaggaccaaaaggagtggccggtgcgcaaggt
ttccctggtaatccgggtgaaccgggcgtggttggccctaaaggagatactgggaaggac
ggcgaagacggaaaacagggtgaacctgggctgtccggagaacctggacctgtggggttg
cctggagagatgggatcaccgggaaaaatgggtccagaaggtcctgccggcagccaaggg
actcctgggctacctggagaaaagggagaccgtgggttgccagggccagctggcaacatt
ggcataactggaccccagggcatgcccggaccgcaaggtttaaccggtttgaggggatcg
ccaggagcttcgggcgagattggaccaacgggtaaatctggcgaaacaggacctgcgggt
aagattggcgagactggggccaagggacagaaaggtgaccgtggtaagcgtggacccaag
ggtcaccgaggtgagcttggaatggttggcttgaagggcgacatgggcgagaaaggtgac
aagggaagtcgtggtaatcaaggtatagatggtccaaagggtcctccgggtcctgttggg
cctttgggtttgaagggcaatgacggtcctcaaggcacgcccggtggtgatggtccattg
gggccgaaaggttctgagggcgttgctggaatgcgaggtgatccaggacctccaggatta
cctggcccgcctggtcctcctgctgaggctccacttattcctccggaattgctgttccgc
atgagtgagttctccatcacaaagggagaagatcgaatgaagcgagaggctgaggacatt
ccggaagaggaggatgactttgacgaagaactgctcaagattgagcccaagaaaaagaag
aagaaaaagaagatcaaggatgacttgggacccaagttcctggacatgtacagctcgatc
tactcgatgcgccaagagctggaccggatccggaagccagtgggcacgagagaaaacccg
ggacgtacctgccgtgatctgcactatggccatccccagttcaaggacggttggtactgg
atcgacccgaacctcggtatggcggacgacgccgtgtacgtgttctgcaacatgacggcc
gagggtgaaacgtgcgtcttcccggatttgcacagctcccagatgccgaacatcccgtgg
cgaaaggagaacgacaagaccgactggtactcgaacctccggggtggattcaggatatcg
tacgaaaccgttggagtggttcagatgaccttcctgcggatcctctcgcaaggtgcgtac
cagaacttcacctacacgtgcatgaacagtgtggcctggttcagcacggaggaaaacaac
tacgacaatgcgatacgattcctgggcgacaacgaaatcgacttgggctacgaaaactcc
aaactacgcccgggcgtgctgatggatggctgcaaaacgggaaaaagcaagagtgaaacg
atcttcgaaattcgaactgccaagctgcagtacctgccgataattgacttttatccggtg
gactacgggcagccccagcaagcgttcggtttccaggtgggaccggtttgcttcaaatga
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