Culex pipiens pallens (northern house mosquito): 120425863
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Entry
120425863 CDS
T07310
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03013
Nucleocytoplasmic transport
cpii03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120425863
03015 mRNA surveillance pathway
120425863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120425863
Enzymes [BR:
cpii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120425863
5.6.2.5 RNA 5'-3' helicase
120425863
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120425863
mRNA cycle factors
Common to processing body (P body) and stress granule
120425863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
NPHP3_N
ATPase
AAA_22
nSTAND3
AAA_32
SRP54
AAA_16
AAA_10
Motif
Other DBs
NCBI-GeneID:
120425863
NCBI-ProteinID:
XP_039446418
LinkDB
All DBs
Position
3:complement(140109787..140120442)
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AA seq
1136 aa
AA seq
DB search
MSVDTYDGAVGSQTLTFLDTEENDLIGADTQGTDFDFRDFTIPSQSQTLASQLDHLGGGA
GAVGTSGTGAIGGQLNGFGRRLGSEASKIAGITSAIGELQFEEDEDDGALGAQQQDLPPH
ACRYCGIHEPSTVVMCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHGDGPLGETVL
ECYSCGVRNVFVLGFIPAKADSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFW
LVKVPTEQEQLRARQVSAAQINKLEELWKENVDATFQDLEKPGIDKEHSPVQFRYVDGYQ
YQNIFGPLVKLEADYDKRLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDE
LRLRYNGELHKPWSCVGHVIKVPDNYGEDVGLELKHNHQAPVECSSNFAVDFIWKGTSFD
RMQMALRKFAVDDNSVSNYIYSRLLGHGRQDGSDDVTFRINNLPKHFSAANLPDLNRSQV
YAVKHALQRPLSLIQGPPGTGKTVTSATIVYQLVRLNGGPILVCAPSNTAVDQLTEKIHR
TNLKVVRVCAKSREAIDSPVSFLALHNQIRNMEQNSDLKKLQQLKDETGELSSSDEKRYR
MLKKQAERELLEAADVICCTCVGAGDPRLQRIKFSSILIDESMQSTEPECMVPVVLGAKQ
LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFF
YEGSLQNGVCAEERKLKVDFPWPSPDTPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKIT
TRFLKAGVKPEQIGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDII
IMSCVRSNEHQGIGFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYKDKKV
LVEGSLNNLKESMIQFTKPKKIVNTLNPGSHFMNTVMVDAKETGYFERGHGSGFGGSSFG
NPGPIGSMVNGPRNASLDMFARTHDPISYISQERAQAAMNNMPVPVGMFMNLSNVPPRFY
QQQQAVQAAKQARRVKPGPIGSKPKPRPIGPPSSQNNAIGAGSLTQGMSQNMSQPGFSLS
QQPDFSQDYLAEYQSQVDGLLSQDSTFGAGPSQSGVGSGADRLVFELPPNQFSQPY
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacacgtacgacggggcggtcggctcgcagacgctgaccttcctggacacc
gaggagaatgacctgatcggggccgacacgcagggcacggactttgacttccgggatttt
accattccgtcccagagccaaacgttggcctcgcagctggaccacctcgggggaggagcg
ggtgcggtcggtacgagcggaaccggtgccatcggaggacagctcaacgggttcgggcgt
cggcttgggtcggaggcgtccaagattgccggcatcacgtccgccatcggcgagctgcag
ttcgaggaggacgaagacgatggggcgctcggtgcccagcagcaggacttgccgccgcac
gcgtgccgttactgcggcattcacgagccgagtacggtcgtgatgtgcaacatctgcaag
aagtggttctgcaacgggcgcggcagcacgtccgggtcgcacatcgtgaaccacctggtg
cgggcgaagcaccgggaagtgacgctgcacggtgatgggccgctcggggagaccgtgctg
gagtgttactcgtgcggggtgcggaacgtgttcgtgctggggttcataccggccaaggcg
gactcggtggtggtgctgttgtgcagacaaccgtgcgccgcgcaaaactccatcaaggac
atgaactgggaccaggagcagtggaagccgctgatcgccgaccggtgcttcttgttctgg
ctggtcaaggtgccgaccgagcaggagcagctgcgtgcgcgccaggtttcggccgcccag
atcaacaagctggaggagctgtggaaggagaacgtggacgcgaccttccaggacctggag
aagcccggcatcgacaaggagcactcgccggtgcagttccggtacgtggacgggtaccag
taccagaacatttttgggccgctggtcaagctggaggcggactacgacaagcgtttgaag
gagagccagacgcaggagaacatcgagatccggtgggacacggggttgaacaagaagacg
attgcttactttacgctggcgaagaacgatggcgatatgaagctgatgcacggggacgag
ttgcggctgcggtataacggggagctgcacaagccgtggagttgcgtggggcacgtgatt
aaggtgccggacaattacggggaggatgtggggttggagttgaagcacaaccatcaggcg
ccggtcgagtgcagttcgaactttgcggtggattttatttggaaggggacgtcgtttgat
cggatgcagatggcgctgcgcaagtttgcggtggacgacaacagcgtgtcgaactacatc
tactcgcggctgctgggacatggcagacaggacgggtcagacgatgtgacgttccggatt
aataatctgccgaagcactttagtgcggccaatttgccggatttgaatcgctcgcaggtt
tacgccgtgaagcacgcgctgcagcgtccgctgagcttgatccagggtccgccgggaacg
ggcaagacggttacgtccgcaacgatcgtgtaccagctggtgcggttgaatggggggccg
attctggtgtgcgccccgagtaacactgcggttgatcagctgacggagaagattcaccgg
acgaacctgaaggtggtgcgagtttgtgccaagtctcgggaggcgatcgattcgccggtg
agctttttggcgctgcacaaccagatccgtaacatggagcagaacagcgatctgaagaag
ctgcagcagctgaaggatgaaactggggagttgagttcgtcggacgagaagcgctatcgg
atgttgaagaagcaagcggagcgggagttgctggaggcggcggacgtgatttgctgcacg
tgtgttggtgcgggggatccgcggcttcagcgcatcaagttcagctcgattttgattgac
gagtcgatgcagtctacggagccggagtgcatggttccggtggtgctgggagcgaagcag
ttgattctggttggagaccactgccagctgggaccggtcgtgatgtgcaagaaggcggcc
aaggctggattgtcgcagagtttgttcgagcggttggtggtgcttgggattcgtccgttc
cggctggaggttcagtatcgtatgcacccggagttgtcgcagtttccgtcgaactttttc
tacgaaggcagtctgcagaacggggtgtgtgctgaggagcgcaagctgaaggtagacttt
ccgtggccgtcaccggatacgccgatgtttttcttggtgacccaagggcaggaggaaatt
gccgggtcgggaacgtcctacttgaatcgtaccgaagcgtcgaacgtggagaagatcacg
acgaggttcttgaaggctggggttaagccggagcagattggcatcattacgccgtacgag
ggccagcgggcttatttggtgcagtacatgcagtaccagggttcgctgcactcgaagctg
taccaggagattgagattgctagcgtggatgctttccagggtcgcgagaaggacattatc
atcatgtcgtgcgtgcgctcgaacgaacatcagggcatcggatttttgaacgaccctcgg
cggttgaacgtggcgctcacccgtgccaagtacggaatcatcatcgtgggtaatccgaag
gtactttcgaagcagcagctgtggaaccatttgctaaacttttacaaggacaaaaaagtg
ctggtcgagggttcgctgaacaatctgaaggagtcgatgattcagtttaccaagccgaag
aagatcgtaaacacgctgaatccgggctcgcactttatgaacaccgtcatggtcgatgcc
aaggagaccggctactttgagcgtgggcacggttccggattcggagggagttcgtttggc
aatccgggcccaatcggaagcatggtgaacggaccgcgcaacgcatcgctggacatgttt
gcccgaacgcacgatcccatcagctacatttcgcaggaacgcgcccaagccgccatgaac
aacatgccggttccggtgggaatgtttatgaacttgtcgaacgttccgccgcgtttctac
cagcagcaacaggccgtccaagcggccaagcaagctcgccgcgtcaaacccggaccgatc
ggcagcaagccgaagccgcgcccaatcggacctccgtccagccagaacaacgccatcggc
gccggttcgctcacccagggcatgtcccaaaacatgtcccagcccggcttcagtctgtcc
cagcagccggacttttcccaggactacctggccgagtaccagtcccaggtggacgggctc
ctttcgcaggactccacctttggcgccggccccagccaatcgggcgtcggcagtggcgcc
gaccggctcgtgtttgaacttccaccgaaccagttctcccaaccgtactga
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integrated database retrieval system
