Culex pipiens pallens (northern house mosquito): 120426337
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Entry
120426337 CDS
T07310
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120426337
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpii03041
]
120426337
Enzymes [BR:
cpii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120426337
Spliceosome [BR:
cpii03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120426337
Complex C
U5 SnRNP specific factors
120426337
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
HTH_61
AAA_19
SWI2_SNF2
PhoH
nSTAND3
Motif
Other DBs
NCBI-GeneID:
120426337
NCBI-ProteinID:
XP_039447031
LinkDB
All DBs
Position
3:complement(169055409..169065620)
Genome browser
AA seq
2144 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERPRRDEATGEVLSLVGKLDGTKMGDRHQRTK
PEKTEERKAKRQKRDEAQYDFNSMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI
QEAIGDQPRDILCGAADEILAVLKNDKLKDRERKREIDGLLGTVTDERFALLVNLGKKIT
DFGTDSAVAAGAGAGVTTDEHIDETYGINVQFEESEEESDEDKYGEIRDDDVLDEGEEAR
DDGMLHAENLGGNEEGKKEKALDPRDIDAYWLQRSLRKYYNDSVMSQAKAAEVMNIFKSA
ADDRECESQLVNLLGFDCFDFLKLIKKNRQMILYCTMLASSQSESERVKIREKMKADPFL
AKILRQLDTGKQEVDDYDSEKSKMQRRRKEQDDDNMEGIGGQIPGSRTVLELDELAFTQG
SHLMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFEEEEELMVIEKLPKYVQPVFAGFK
TLNRIQSRLYKTALESDENLLLCAPTGAGKTNVALLTMMREIGKHINDDGTINVDEFKII
YIAPMRSLVQEMVGNFGKRLATYNLTVSELTGDHQLSREQIAATQVIVCTPEKWDIITRK
GGEKTYTQLVRLVIIDEIHLLHDERGPVLESLVARTIRNIETTQEDVRLVGLSATLPNYQ
DVATFLRVRPETGLFYFDNSYRPVALEQQYIGVTEKKALKRFQVMNDIVYEKVMEHAGKN
QVLVFVHSRKETGKTARAIRDMCLEKDTLGSFLREGSASMEVLRSEAEQVKNGELKDLLP
YGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKG
RWVELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQLISKMPD
MLNAEIVLGTIQNVKDAVTWLGYTYLYIRMLRQPTLYGVSYDAIKEDPLLEHFRANLVHT
AALHLEKSGLIKYDRKSGHFQVTEIGRIASHYYCTHDTMLTYNQLLKPTLSEIELFRVFS
LSGEFRNITVREEEKLELQKLMERVPIPIKESMEEPSAKVNVLLQAYISQLKLEGFALMA
DMVYVTQSASRLLRAIFEIVLHREWAQLADKCLTLCKMIDRRMWQSMSPLRQFRKMPEEI
VKKIEKKNFPWERLYDLEANEIGELIRVPKLGKTIYKYVHQFPKLELSTHIQPITRSTLR
VELTITPDFQWDEKVHGQSEAFWILVEDVDSEVILHHEYFLLKYKYCQDDHLVKFFVPVF
EPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPISALREPRFEE
LYADRFPQFNPIQTQVFNAVYNSEDNVFVGAPTGSGKTTIAEFAVLRMLQQNPHGRVVYL
VSRDALAELIFMDWHQKFGQNLGCKVVKLTGETGTDLKLIAKGQIIVTTADKWDILSRRW
KQRKNVQNIQLFIVDELQLIGGEEGPVLEVVCSRMRYISSQIEKQIRIIALSASLSDARD
VAQWLGCNANATFNFHPSVRPIPLELHVQGFNITHNASRIAAMSKPVYNAVTKFSPHKPV
IVFVSSRKLARLTAIDILTYCAAEAQPNRFFHAEEEDIKPFLDRMTDKTLKETLSQGVAY
IHEGLTASDHRIVEQLFDSGAVQIAVVTRDLCWGLNISAYLVIIMDTQFYNGKSHSYDDY
PVTDVMQMVGRANRPLEDDDAKCVLMCQSSKKDFFKKFLNESLPVESHLDHRMHDHFNAE
IVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQGVTHRHLSDHLSELVESTLSDLEQS
KCISVEDEMDTLPLNLGMIAAYYYINYTTIELFSLSLNAKTKIRGLLEIISSAAEYEDVV
VRHHEDNILKSLAARLPNKLTGPNGTAPKYNDPHIKTNLLLQAHLSRLQLGAELQGDTEQ
ILGKAIRLIQACVDVLSSNGWLSPAVAAMELAQMVTQAMWSKDSYLKQLPHFNADIVKRC
QEKNIETVFDIMELDDEDRIRLLQLNDQQMSDVARFCNRYPNIEMTFEVVDKDRIHSGSS
VNVVVNLEREDDVTGPVIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDF
VAPSPGHHDYTLYYMSDSYLGCDQEYKFNINVGDFQSESESESD
NT seq
6435 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgcagcagctcggcagctgcagtacgagtacaaagcgaactcgaacttggtg
ctgcaggcggatgtgcggttgattgagcgtccgcggcgggatgaggctaccggggaggtg
ctgtcgctggtgggcaagttggacgggacgaagatgggcgatcggcaccagcggaccaag
ccggaaaagacggaggagcggaaggccaagcggcagaagcgagacgaggcgcagtacgat
tttaacagcatgaagggcgcgacgctgctgtcggaggggattgatgagatggtcgggatt
gtgtaccggccgaagacgcaggaaacgcgccagacttatgaggttttgctgagttttatt
caggaagcgattggagatcaaccgagggatattctgtgtggggcggccgatgagattttg
gcggtgctgaagaatgataagctgaaggatcgcgagcggaagcgcgagattgatgggctg
cttgggacggtcacggatgagcggttcgcgttgttggtcaatctggggaagaagattacc
gactttgggacggattcggcagtcgctgcgggggcgggagctggggtgaccaccgacgag
catattgatgagacgtacggcatcaacgtgcagtttgaagagtcggaagaggagagtgat
gaggataagtacggggagatccgggacgatgacgtgcttgatgagggggaagaagcgcgt
gacgacggaatgttgcacgcggaaaacctcggtggaaacgaggaaggcaagaaggagaaa
gcgcttgatccgcgggacattgacgcgtactggttgcagcgatcccttcgaaagtattac
aacgattcggtcatgtcccaggcgaaggctgcggaggtgatgaacatcttcaagagtgct
gccgacgatcgggagtgcgagagtcagctggtcaacctgcttggatttgactgtttcgat
tttctcaagttgatcaagaagaaccggcagatgattctgtactgtacgatgctggcttca
tcgcagagtgaaagcgagcgggttaagattcgcgagaagatgaaggccgatccgtttctg
gcgaagatcttgcgccagctggacacgggaaagcaggaggtggatgattacgacagtgaa
aagagcaagatgcaacgccgtcggaaggaacaggacgacgacaacatggagggcatcggg
ggacaaattcctggcagtcgaaccgtgctggaattggatgaactcgcgttcacccaaggc
tcccacctgatggccaacaagcggtgccaactgcctgatggaagtttccgcaaacagcgc
aagggttacgaagaagtgcacgtgccggcgttgaagccgaaacccttcgaagaggaagag
gagctgatggtcatcgagaagctgcccaagtacgtgcagcccgtgttcgccggcttcaaa
acgctcaaccgaatccagagtcgcctgtacaagacggccctcgagagcgatgagaatcta
ctgctgtgcgccccgaccggtgccggtaaaacgaacgtggccctgctcaccatgatgcgc
gagatcggcaagcacatcaacgacgacggaacgatcaacgtggacgagttcaagatcatc
tacattgcgccgatgcgatcgctcgtacaggaaatggtcggcaacttcggcaaacgtctc
gccacgtacaatctgaccgtgtccgagttgaccggagatcaccagctcagtcgggagcag
attgccgcaacgcaggtcatcgtttgcacgccggaaaagtgggacatcatcacgagaaag
ggcggcgaaaagacgtacacccagctggttcggttggtcatcatcgacgaaatccatctg
ctgcacgacgagcgtggtccggtgctggaatcgctggtcgcgcgaacgatccgtaacatt
gaaaccacccaggaagacgttcgtctggttggactgtccgccaccctccccaactaccaa
gacgtggcgacgttcctgcgagtacgaccagaaaccggtctcttctactttgacaacagc
taccggccggtcgccctggagcagcagtacattggcgtgacggagaagaaggcgctcaag
cggttccaggtcatgaacgacatcgtgtacgagaaggtgatggaacacgccggcaagaac
caggtgctggtgtttgtgcactcgcgcaaggaaacggggaagacggcgcgcgccatccgg
gacatgtgcctggagaaggacacgctcgggagcttcttgcgggaaggttccgccagtatg
gaggtgttgcgctccgaagcggagcaggttaagaacggtgagctgaaggatttgcttccg
tacgggtttgcgatccatcacgccgggatgacgcgagttgatcgtacgctggttgaagat
ctgttcgccgatcggcacatccaggtgctggtttcgacggccactcttgcgtggggtgtg
aatctcccggcgcacaccgtcatcatcaagggaacgcaggtttacaacccggaaaaggga
cgctgggtcgagttgggcgcgttggacgtgctgcagatgttgggtcgtgccggtcgtccc
cagtacgacacgaaaggcgagggaatcctcatcaccaaccacagcgagctgcagttctac
ctgtcgctgctgaaccaacaactccccatcgaatcgcagctcatctccaaaatgcccgac
atgttgaacgccgaaatcgtgctcggtacgatccagaacgtcaaggacgccgtcacctgg
ctcgggtacacgtacctgtacatccggatgctacgccaaccgacgctgtacggcgtgtcg
tacgacgccatcaaggaagaccccctgctggagcacttccgcgccaacctggtccacaca
gcagccctgcacctcgagaagagcggcctcatcaagtacgaccgcaaaagcggtcacttc
caggtcaccgaaatcggtcgaatcgcctcccactactactgcacgcacgacaccatgctc
acgtacaaccagctgctgaagccaaccctcagcgagattgaactgttccgcgtgttttcc
ctgtccggcgagttccgcaacatcacagttcgcgaggaggagaaactcgagctgcaaaag
ctgatggagcgcgtcccgatcccgatcaaggaaagcatggaggaacccagcgccaaggtc
aacgtcctcctgcaagcctacatctcccagctcaaactcgagggcttcgccctgatggcc
gacatggtgtacgtgacccagtccgcgtcccgtctgctgcgtgccatcttcgagattgtc
ctgcaccgcgagtgggcccagctggcggacaagtgtctgacgctgtgcaagatgatcgat
cggcgcatgtggcagagcatgtccccgttgcgtcagttccgcaagatgcccgaggagatc
gtgaagaagatcgagaagaagaacttcccgtgggagcggctgtacgatctggaggcgaac
gagatcggagagttgattcgcgtgccgaagctgggcaagaccatctacaagtacgtgcac
cagttcccgaagctggagctgtccacgcacattcaaccgattacgcgttctacgctgcgc
gtcgagttgaccatcacgccggacttccagtgggacgagaaggttcacggccagtcggag
gcgttctggattttggtggaggacgtcgactccgaggtgattctgcaccacgagtacttc
ctgctcaagtacaagtactgccaggacgaccacctggtcaagttcttcgtgccggtgttt
gaaccgttgccgccgcagtacttcctgcgcatcgtgtccgaccggtggattggcgccgag
acgcagctgccggtgtcgttccgccacctgattctaccggagaagaacctgccgccgacg
gagctgctcgatttgcagccgctgccgatcagtgcgctgcgcgagccacgcttcgaagag
ctgtacgcggaccggttcccgcagttcaatccgatccagacgcaggtcttcaacgcggtg
tacaacagcgaggacaatgtgtttgtgggtgcgccaacggggtcgggcaagacgacgatc
gcggagtttgccgtgctgcggatgttgcagcagaatccgcacggtcgggttgtttatttg
gtctcgagggacgcgctggccgagctgatcttcatggattggcaccagaagtttggccag
aacttgggctgcaaggtggtcaagttgacgggggaaaccggaacggacttgaagctgatt
gccaagggacagatcatcgtgaccacggcagacaagtgggacattctgtctcgtcgttgg
aagcagaggaagaacgtccaaaacatccagctgtttattgtggacgagctgcagctgatt
ggcggtgaggaaggacctgtgttggaggtcgtctgctcccgtatgcggtacatttcttcg
cagattgaaaagcagatccggatcatcgccctgtcggcatcgctgtcggacgcccgggac
gtagctcaatggctgggttgtaacgcgaatgcgaccttcaactttcacccgagcgtgcgg
ccaatcccgctggaactgcacgtgcagggattcaacattacgcacaacgcgtcgcgcatt
gcggccatgtcgaagccggtgtacaacgccgtaaccaagttcagtccgcacaaaccggtg
attgtgtttgtgagctcgaggaagttggctcgcctgacggcaattgacattttgacgtac
tgtgcggccgaagctcagccgaaccggttcttccacgcggaagaggaggacattaagccg
ttcttggatcgcatgacggataaaacgctgaaggagacactctcgcaaggggttgcgtac
atccatgaaggcttgacggcgtcggatcatcgcatcgtggagcagctgttcgattccgga
gccgtgcagattgccgtcgtcacgcgggatctgtgctggggcttgaacatttccgcctac
ctggtgatcatcatggacacgcagttctacaacggcaagagtcactcgtacgacgactac
ccggtcacggatgtcatgcagatggtgggacgggccaaccggccgctggaggatgacgac
gccaagtgcgtgctgatgtgtcagagctccaagaaggactttttcaaaaagttcctgaac
gagagtctaccggtggagagccatctggatcatcgtatgcacgatcacttcaacgcggag
atcgtcaccaaaaccatcgaaaacaagcaggacgccgttgattaccttacctggacgttc
ctgtaccggcggctcacccagaaccccaactactacaacctgcagggcgtcacccaccga
cacttgtccgaccacctgtccgaactggtcgagtcgaccctctccgacctggagcagtcc
aagtgcatcagcgtggaggacgagatggacacgctgccgctgaatctgggcatgatcgcg
gcgtactactacatcaactacaccacgatcgagctgttcagcttgtcgttgaacgccaag
accaagatccgcggcctgctggagatcatctcgtcggcggccgagtacgaggacgtggtc
gtgcgtcaccacgaggacaacattctgaagagtttggccgcgcggttgcccaacaagctg
accggtccgaacggaaccgctcccaaatacaacgacccccacatcaagacgaacctgctg
ctgcaggcgcacctctcccgcctccagctcggcgccgaactccagggcgacaccgagcag
atcctcggcaaggcgatccgcctcatccaagcttgcgtggacgtgctcagctcgaacggg
tggctctcgccggccgtcgccgccatggaactcgcccagatggtcacgcaggccatgtgg
agcaaggactcgtacctgaagcagctgccgcactttaacgccgacatcgtgaagcgctgc
caggagaagaacatcgaaaccgtgttcgacatcatggagctggacgacgaggaccgcatc
cggctgctgcagctcaacgatcagcaaatgtcggacgtggcgcggttctgcaaccgctac
cccaacatcgagatgacgttcgaggtcgtcgacaaggaccgcatccactcgggctcgtcc
gtcaacgtggtggtcaacctggagcgggaggatgacgtcaccggaccggtcattgcgccg
ttcttcccacagaaacgcgaggaaggctggtgggtggtgatcggcgacccgaagacgaac
tcgctgctctcgatcaagcggctgacgctccagcagaaggccaaggtcaagctggacttt
gtggcgcccagcccgggccaccacgactacacgctgtactacatgagcgactcgtacctg
ggctgcgaccaggagtacaagttcaacatcaacgtcggtgacttccagtcggagagcgag
agcgagtcggattag
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integrated database retrieval system
