Culex pipiens pallens (northern house mosquito): 120430807
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Entry
120430807 CDS
T07310
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120430807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpii03019
]
120430807
Enzymes [BR:
cpii01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120430807
Messenger RNA biogenesis [BR:
cpii03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120430807
mRNA degradation factors
3'-5' decay
Ski complex
120430807
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
ResIII
DEXQc_Suv3
MTR4_beta-barrel
Helicase_C
MTR4-like_stalk
Spectrin_Anc-1
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
120430807
NCBI-ProteinID:
XP_039451863
LinkDB
All DBs
Position
1:complement(84798901..84803085)
Genome browser
AA seq
1216 aa
AA seq
DB search
MSIDPSWWSKPPPIVEDTEDTLRHFILEPFSSGSEPKPSFYPRTLTIEALYEIPPAPLGT
QIVPKRCQETGAIIDFVEVPLENAGSNAKNSMSLQREPGPADDNATRGSAANFPFWPGGF
DEPENTLQMLDIDNAAFEENLKTCPPGFTNGMEFGNVRVSDGGIIDLLSAIELEMEGLSV
WDRDGSDSSDDEPRFDPKTLKAVPLGENVDEDLLKVEQNPVEQVLKIANTGTNGVKTAEW
AEILDVSKPVTDFHTKIPEMAHRYPFELDIFQKQAIIKLEEHNHVFVAAHTSAGKTVVAE
YAIALSKKHMTKTIYTSPIKALSNQKYRDFKSTFEDVGLITGDIQIDPTASCLIMTTEIL
RSMLYCGSDITRDLEYVIFDEVHYITDADRGHVWEEVLILLPDHVCIVMLSATVPNTLEF
ANWVGKTKKKRVHVVSTPKRPVPLKHYLYTGCGGKSKDDMFLVVDEQSKFLIDGFRKAKE
AITARMSKNANKNSGRPAQFNQKQEQTLWVGLIDQLQKNDKLPVVAFTLSRNRCDNNANA
LMSCDLTTGREKYLITSFFQLCLQKLKPPDRMLPQVIQVQNCLQRGIGIHHSGILPILKE
IVEMLFARGLVKILFATETFAMGVNMPARTVIFDSTKKFDGQTSRMLQPAEYTQMAGRAG
RRGLDKNGTVIIICKMGVAGESELQNMILGKPMRLESQFRLTYAMILYLLRVELVTVENM
MLHSFREFGKRLKLPESTCELNKMEEKMSKLNDLSEHLKPLCQFYEAAAEYLGKWDELMP
KLFLSQKVSNEMKPGRVLVVTHAQHHNKLAILLSVVQQDQNTARYKVLVLDHQKAPSSST
GDADKDNPVMERGKLWHRMLALSAQHRHFVPEGVGGHCVLQITVGDVMDVTKQVIKCDPV
KILQNWDNRQIPRFKDQPPSQSVLDATAALSELNMDIVNEKTKLETLKFQFNINQVKLSE
DLKRAREVLERFLPYTDIADFGHEFAFVYDRKQLETKLEDLKYQVSYKSMSLYPDYCNKL
KVLQELKYIDDMQQVAMKGRVACEMGQNELMITELVLRNILTDLQPAEIAALLSSLVFQA
KTEVEPKMIETLKKARALFEEVERDIRSVEQMYGVTDLLERDKLNFGLVEVVYEWARNKP
FAEIMDLTDIKEGIIVRCIQQLNETLCNVKDAARIIGDPVLHSKMEEASNAIKRDIVFAA
SLYTSSTPIEIDNSVE
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtctatcgatccatcctggtggagcaaacctcccccgatcgtcgaggacactgaggac
acacttcgtcactttatcctggaaccgttctcttcgggtagcgagcctaagccgagcttc
tacccgcggacactgacgatcgaggcgctgtacgagatcccgccggcaccgttgggcacc
caaatcgtgccgaaacgctgccaggaaacgggtgcaatcatagactttgtcgaggttccc
ctggaaaatgccggaagtaatgcgaaaaattctatgtccctgcagcgtgaaccgggccca
gcggacgacaatgcgacgcgaggttcggcagcgaactttcccttctggccgggtggattc
gacgaaccggaaaatacgctgcagatgctggacattgacaacgcggcgtttgaggaaaat
ttaaaaacttgtccgcccgggtttacgaatggaatggagtttggtaatgtgagggtttcc
gacggtggcatcatcgatctgttgtcggccatcgagctagaaatggaaggtttgtcggtt
tgggatcgggatggaagtgacagttctgacgatgagccgagatttgacccgaaaacactg
aaagccgttccgcttggggaaaatgtcgatgaagatttgctcaaagttgagcagaatccg
gttgagcaggtgcttaagattgcaaatacgggcacgaatggggtgaaaactgcggaatgg
gcagaaattctggacgtgtccaagccggtgacggattttcacactaaaattcccgaaatg
gcgcacagatatccgtttgagttagatatttttcaaaagcaggccatcatcaagctggaa
gagcacaaccacgtgtttgtggccgctcacacgtcggctggaaagacggttgtggcggaa
tatgccattgcattgtccaaaaagcacatgactaaaacgatctacacttcgccgatcaag
gcactgtcaaaccagaagtatcgggactttaaatcaaccttcgaagacgttggattgata
actggggacattcagatagatcctacggcatcctgcctgattatgacgacggagattctc
cgttccatgctgtactgtggcagtgacataactcgagatttggagtacgtgattttcgat
gaggtccattacattaccgatgccgaccggggacacgtgtgggaagaggttctaattttg
ctgcccgaccacgtgtgcatcgtcatgctgagtgccacagttccgaacacgctcgaattt
gccaattgggtgggaaagacgaaaaagaaacgcgtccacgtcgtgagtactccgaagcga
ccggttccgctcaaacattacctgtatacgggttgtgggggcaagtccaaggacgacatg
tttttggtcgtggacgaacagagcaaattcctcattgatgggttccggaaggcgaaagaa
gccatcacggccaggatgtccaaaaacgccaacaagaactctggccgtccggcgcagttt
aatcagaagcaggagcaaaccttatgggtcggactgattgatcagctgcaaaagaacgat
aaactacccgtggttgctttcacgttgtcacggaaccgttgcgataacaatgccaatgcg
ttgatgtcgtgcgatttgaccacgggccgggagaaatatctcataacgtcgttcttccag
ctgtgtctgcaaaagctgaagcccccggatcgtatgctgcctcaggtaattcaggtccaa
aattgcttgcaacgaggcatcggaattcatcacagcggaattttgcccattctgaaggag
attgtggagatgttgtttgcgcgtggcttggtgaagatcctgtttgcgacagaaacgttc
gccatgggcgtcaacatgcccgccaggacggtcattttcgactcgacgaagaaatttgac
ggccaaacctcgcgaatgttgcaaccggccgagtacactcagatggcgggtcgtgccgga
cggcgtggcctggataagaacggaaccgtaattatcatctgcaagatgggtgtggcgggc
gaatccgagcttcagaacatgatccttggcaagccaatgcgactggagtcacagtttcgg
cttacgtacgcgatgatactctacctgctgcgggtggaactggtcacggtggagaacatg
atgctgcacagcttccgcgagtttggaaagaggttgaaacttcccgagagcacctgcgag
ctgaacaagatggaggaaaaaatgtccaaactcaacgatcttagcgagcatttgaagccg
ttgtgccagttttatgaagcagctgctgaatatctagggaaatgggacgaacttatgccc
aaactatttctttcgcaaaaagtctccaacgagatgaaaccgggccgggtgttggtggta
acccacgcacaacaccacaacaagctggccattctgctgtccgtcgtccaacaagaccag
aataccgcacgctacaaggtcctggtgcttgaccaccagaaagcgccgtcatcatcgacc
ggagatgccgacaaggataacccggtgatggaacgaggcaagctgtggcaccgaatgctg
gcgctgtccgcccaacatcgccactttgtaccggagggcgttggtggacattgcgtgctg
cagattaccgtcggcgacgtgatggatgtcacgaagcaggtgatcaagtgtgatccagtt
aaaattcttcaaaattgggacaaccggcagattccccggttcaaggaccaaccgccttcg
caatccgtgttggacgcgacggccgcgctgagcgagctcaacatggacattgtgaacgaa
aagaccaagctggagacattaaagttccagttcaacatcaatcaggttaaactgagtgag
gatttgaagcgggccagggaggtgctggaacgtttcctaccttacaccgacattgccgac
tttgggcacgagtttgcatttgtgtacgatcgcaaacagttggaaacaaaactggaagac
ctcaagtatcaagtttcctacaaaagcatgtcactgtacccggattattgcaacaagctg
aaggttctgcaagagttaaagtacatcgacgatatgcagcaggtggccatgaaaggacgt
gttgcgtgcgaaatgggccagaacgagctgatgattacggagctggtgctgcggaacatt
ctgaccgatctgcagccggcggaaattgctgccctgctgtcgagcttggtcttccaggcg
aaaaccgaggtggaaccgaaaatgatcgaaacgttgaaaaaggcgcgagcactcttcgaa
gaggtcgaacgggacatccgcagtgtggagcagatgtacggcgtgacggatctgcttgaa
cgagacaagctcaattttggactggtggaggtcgtgtatgagtgggcccggaacaagccg
tttgcggaaatcatggacctgaccgacatcaaggagggcatcattgtgcgctgcattcag
cagctgaacgaaacgttgtgcaacgtaaaggacgccgcaagaattatcggcgatcctgtg
ttgcacagtaaaatggaggaggcatccaatgccatcaagcgggacattgtgtttgctgct
agtctgtacacttccagcacgccgatcgagatcgataactcggtggagtga
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integrated database retrieval system
