Campylobacter pinnipediorum: CPIN18020_0012
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Entry
CPIN18020_0012 CDS
T05033
Name
(GenBank) mRNA degradation ribonuclease J1/J2 (metallo-beta-lactamase superfamily)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cpin
Campylobacter pinnipediorum
Pathway
cpin03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpin00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPIN18020_0012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpin03019
]
CPIN18020_0012
Messenger RNA biogenesis [BR:
cpin03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPIN18020_0012
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
MupG_C
DUF4755
Zip
Motif
Other DBs
NCBI-ProteinID:
AQW85270
UniProt:
A0A1S6U606
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All DBs
Position
complement(12803..14818)
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AA seq
671 aa
AA seq
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MSENNEAKVLTNDSKDNKKKRFNHKKPKQKVDENGVTQNKQEKKPTNNKAKNPNTNTNKQ
ENSTNTNSEKAPKKKRIRKNLPAKLNGNEPWQQDIAQAMQANRAAHELILEPLKYLHSNE
HKIRITPLGGLGEIGGNMTVFETENSAIIVDIGMSFPNEGMHGVDILIPDFDYIRKIKDK
IAGIIITHAHEDHIGAVPYFFKEFKFPIYATPLPLGMINNKFEEHGLKSERSFFRSVEKR
KPYQIGEFEIEWIHMTHSIIDASSLAITTKAGTIIHTGDFKIDHTPIDGYPADLGRLAYY
GERGVLCLMSDSTNSYKEGFTKSESSVGKTFDAIFSKAKGRVIMSTFSSNIHRVYQAISW
GLKYNRKVCVIGRSMERNLFTAMELGYIKLDKKIFIDANEVAKYKDSDVLIVTTGSQGET
MSALYRMATDEHKYIKIKPTDQIIISSKAIPGNESSVSKVLNFLIKSGANVAYQDFSEIH
VSGHAAQEEQKLMLRLVKPKFFLPVHGEYNHIAKHKETAIACGVNEKNIYLMSDGDQMEV
SYKHLKRVRTVKTGKMFIDNQINKQIADDVVIDRQKLAESGVVMIIAQISSHNQKLIGKP
RVISYGLVANKQDAEFSKEMQEILIQFLSNVKEELLKDNRMLESQIRQVIRKHIFRKVKK
YPTIVPIIYIM
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaacaatgaagctaaagttctaactaacgatagcaaggacaacaaaaaaaag
agatttaaccataaaaaacctaaacaaaaagtagatgaaaatggtgtaactcaaaacaaa
caagagaaaaaaccaacaaacaacaaagcaaaaaatcctaacactaacacaaacaaacaa
gaaaacagcacaaacactaacagcgaaaaagcacctaagaaaaaaagaatacgtaagaat
ttacccgccaaactaaacggtaatgaaccttggcaacaagatatagcgcaggctatgcaa
gcaaacagggctgcacatgagcttatacttgagccactaaagtatctacactctaacgaa
cacaaaatacgcataactccacttggtggacttggtgagataggcggaaatatgactgtg
tttgagactgaaaactcagctatcatagtagatatagggatgagctttccaaatgaaggt
atgcacggggttgatatacttatacctgattttgactatataagaaagataaaggataaa
atcgctggtatcattatcactcacgcacacgaagatcatataggagctgtgccgtatttt
ttcaaagagtttaaatttcctatatatgctactccacttccacttggtatgataaataat
aaatttgaagaacacgggctaaaaagcgaaaggtcgtttttccgttcagtggaaaaaaga
aaaccatatcaaataggcgagtttgagatagagtggatacacatgacacactctatcata
gatgcctcatcacttgctataacaacaaaggctggaacgataatacacacaggggatttt
aagatagaccatactcctatagatggctatcctgcggatcttggtcgcttagcgtattat
ggtgagcgcggtgttttatgtcttatgagtgatagtacaaatagctataaagagggcttt
acaaagtctgaaagtagtgttggtaagacttttgatgcgatattttcaaaagcaaaaggt
agggttataatgagcacatttagctcaaatatccaccgtgtttatcaagctatatcttgg
ggacttaaatacaacagaaaagtttgtgtgataggtagaagtatggaaagaaacctattt
actgcaatggaacttggttatataaagcttgataaaaagatatttatagatgcaaatgag
gtagctaagtataaagatagcgatgtgcttatagttactactggatctcaaggcgagact
atgagtgctttatatagaatggcaactgatgagcataaatacataaagataaaaccaact
gaccagataataataagctcaaaagcgataccaggtaatgagtctagtgtatcaaaggta
ttaaactttttgataaagagcggagcaaatgtagcttatcaggactttagtgaaattcac
gtaagtggacatgcggcacaagaggagcaaaagctgatgttaaggcttgtaaaacctaaa
tttttcttacctgttcacggcgaatacaaccacatagcaaaacacaaagagacagcgata
gcatgtggtgtaaatgagaaaaatatatatcttatgagtgatggcgatcagatggaagta
tcatataaacatctaaaaagagtaagaactgtaaaaaccggaaagatgtttatagataat
caaataaacaaacaaatagctgatgatgttgtgatagacagacaaaaattagctgagtct
ggtgtcgttatgataatagctcaaatttcaagtcacaatcaaaagcttataggaaagcct
agggttataagctatggtttagttgcaaataagcaagatgctgagtttagtaaagagatg
caagagatattgattcaatttttaagcaatgtaaaagaggagcttttaaaagataataga
atgcttgaaagtcagataagacaagtgataagaaaacatatatttagaaaagtgaaaaaa
tatccgactatcgttccaataatttatataatgtaa
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