Chryseobacterium piperi: CJF12_09055
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Entry
CJF12_09055 CDS
T05071
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJF12_09055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpip03019
]
CJF12_09055
03009 Ribosome biogenesis [BR:
cpip03009
]
CJF12_09055
Enzymes [BR:
cpip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CJF12_09055
Messenger RNA biogenesis [BR:
cpip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJF12_09055
Ribosome biogenesis [BR:
cpip03009
]
Prokaryotic type
rRNA helicases
CJF12_09055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ATL75956
UniProt:
A0A086BKW8
LinkDB
All DBs
Position
complement(2084812..2086500)
Genome browser
AA seq
562 aa
AA seq
DB search
MNLFTETNLSPDILKAIGEMGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMQNIKTTAVYGGSSIMDQIRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMSKEVERISKNYLTNPHRISVGSINEVKKNIKHEYYVVGYRNKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKSA
TKIEINEKIIPTGDEIIKAQVGGVFEKLFTEHEDLFEFDDSLIPDLSNFTKEELVHKLLQ
FQLKDLALFYKDKHDLVEQKFNNRDDDYSRRDRGRDRDRGRDRDRGGDRGRERGGKPRKK
NENMVRFFFNLGKKDQLKKLDVLEIINKATAGKSKKRAEIGDIEILEKFSFFEVEKSFKG
DLLSNISSMKFKGKDMRAEEAN
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagtcctgacatccttaaggcaattggcgaaatg
ggttatgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatata
cgcgacttgatcgcacttgcgcagactgggacaggcaaaactgcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgagaattatgtcttcagatttctaaagacataaaaaattactctaaatacatgcaaaac
atcaaaactacagcagtttacggtggtagcagtattatggatcagattcgttctttaaag
gacaaaccacagattattgtgggaactccgggaagagtaattgatttaattaatagaaaa
gctcttgacttttctgctattcattggttggttttagacgaagccgatgaaatgctttca
atgggtttcaaagacgaattggaaacaattttaagtgaaactcctgaaacaaaacaaaca
ttcttattctcggcaacgatgagtaaagaagtggaaagaatttctaaaaattatcttacc
aatccacatcgtatttcggtaggttctattaacgaagttaaaaagaacattaaacatgaa
tactatgttgtaggataccgtaacaaaaaagaagctcttaagagactaattgatgctaac
cctaatcaatattccattattttctgtagaacgagaatggaaactcaggaagtagcagat
ttcttaatgcagaacggatatgcggctgatgctcttcacggagatctttctcaagcgcag
agagatactgtaatgaagaaattcagattgaagaatatcgatattttggtagcgacggat
gtggctgcaagaggtttagatgtaaactctcttacgcacgttatccactattcattacct
gatgatcctgaagtatttgttcacagaagtggtagaacaggtagagcaggaaaagacgga
atctcaatgtctttaatcaagcctgaagaaagcagaaaactaaaacaaataaaatctgca
accaaaattgaaattaatgaaaagataatcccaacgggagatgaaatcattaaagctcag
gttggtggtgtttttgaaaaattatttacagaacacgaagatttatttgaatttgatgac
agcttaattcctgatctaagtaacttcactaaagaagaattagttcacaagttgttacag
ttccagttgaaagaccttgcattattctacaaagataagcatgatcttgttgagcagaaa
ttcaacaacagagatgatgactattccagaagagacagaggtcgtgacagagacagagga
agagaccgcgatagaggaggagacagaggaagagagcgtggtggaaagcctagaaagaag
aacgagaatatggtaagattcttcttcaacctgggtaaaaaagaccaattaaaaaaactc
gatgttttagaaattatcaataaagcgactgctggaaaaagcaaaaaaagagctgaaatt
ggagatatcgaaattttagagaaattttcattctttgaagtagaaaaatcatttaaggga
gaccttttaagtaatatttcttcaatgaagtttaaaggaaaagatatgagagctgaagag
gctaattaa
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