Chryseobacterium piperi: CJF12_17220
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Entry
CJF12_17220 CDS
T05071
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CJF12_17220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpip03021
]
CJF12_17220 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpip03400
]
CJF12_17220 (rpoC)
Enzymes [BR:
cpip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CJF12_17220 (rpoC)
Transcription machinery [BR:
cpip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CJF12_17220 (rpoC)
DNA repair and recombination proteins [BR:
cpip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CJF12_17220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl
RPOC_hybrid
RnfC_N
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ASW75839
UniProt:
A0A086BAX6
LinkDB
All DBs
Position
3898619..3902884
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPIKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHINLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFDNMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCRLPVKENGELVTRLIETSVGRILFNQIVPKQ
SGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMVASAIETVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEVDCGTLRGTEVTALKKNDEIVE
KISERILGRVSLHNIYDPETDELIAEADQIINEQLAKRIEETGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIGAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIIAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNESRTPLMIANVPYGSVLAVKP
GDKVKKGDVICKWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQRAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDSGDSKEFKPGQMITARELRDE
NSKLKREDQNLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
VDYLGGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaatcaagtagatttaataaaataaccatcggtttagcttctccc
gaatccattcttcaggattcaagaggagaggttttaaaaccggaaactattaactacaga
acgcataaaccagaaagagatggtttgttctgtgaaaaaatcttcggtcctattaaggat
tacgaatgtgcttgtggtaaatacaagagaattcgttacaaagggatcgtttgtgaccgt
tgtggggtagaagttacagagaagaaagtaagaagagagagaatcggacacattaacctt
gtggttcctatcgctcacatctggtacttccgttctttaccaaacaaaatcggttacctt
ctaggtattccttccaagaaattggatatgattatctattatgaaagatatgttgtaatc
cagcaaggtattgctaagaaactggatggttctgattttgataacatggaattcttaaca
gaagaagaatacctggatatcatggaaacgcttcctgttgaaaaccaatatcttgatgat
tctgatccaaacaaattcatcgctaaaatgggtgctgaagctgttgaggaattattaaaa
agaatcgatcttgatgcattatctttcgacttgagacacaaagctcacaatgaaggttct
aagcaaagaagaactgaagctctgaaaagattgaacgttgtagaagcattaagaggtgct
aatacaagaatgatcaacagaccggagtggatgattatgcgtgtacttcctgtaattcca
ccagaattaagaccattagttccattggatggaggacgttttgctacttctgacttaaat
gacctttatagaagagttattattagaaataaccgtttaaaaagattattggagatcaaa
gctcctgaagtaatcttaagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataatacaagaaaatcttctgcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaaacaaggtcgtttccgtcagaacttattaggtaaaagg
gtagattactcagcacgttcggtaattgttgtaggtccaaacttacagcttcacgagtgt
ggtattcctaaagatatggctgcggaactttacaaaccgtttatcattagaaagctaatt
gaaagaggtattgtaaaaacagtaaaatctgcaaagagaatcatcgacagaaaagaacct
gtagtatatgatattcttgaaaacgtgatgaaaggtcacccggttctattgaacagggca
cctactcttcacagattgggtattcaggctttccaacctaagatgatcgaaggtaaagca
attcagttacacccattagtaacaacggccttcaatgccgatttcgatggtgaccagatg
gcggtacatttaccattaggccctgaagcgatccttgaagctcagttattaatgttaggt
tctcagaatatcttgaacccggctaacggttctccaattacagtaccatctcaggacatg
gttcttggtctttatttcatgactaaagaattgagttctactgaggatatgaaagtaaaa
ggagaaggattagcattctactctccagaagaagcagaaattgcttatgcagaaggaaaa
gtttctttaaatgctaaggtaagatgtagattaccagttaaagaaaatggagaattagta
acaagattaattgaaacatctgttggtagaatcttattcaaccaaattgtacctaagcaa
tcaggatacatcaatgaacttttaacgaaaaagtcattaagaaatgttatcggtaaaatt
cttgcagatacagatttccctacaacagtgaaattcttggatgcaatgaaagatttagga
tattcaaatgcatttaaaggaggtctttccttctcacttggggatattgtagttcctgtt
gagaagaagcagatggttgcctcagcaattgaaacggtagatgaaattagagccaactat
aacatgggtcttattacagatacagaacgttataatcaggtaattgacgtttggacaaac
accaatgcaggattaactgaaatgatcatgagcagaatgaaaaccgatcaaggtggattc
aactctgtatatatgatgcttgactctggggcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcaaaaagccggttctactggtgcggag
attatcgaaaacccgatccttgcaaactttaaagaaggtctttcgatccttgagtacttt
atctctacccacggtgcacgtaagggtcttgcggataccgctcttaagactgccgatgca
ggttacttaacaagaagattggtagacgttgcacaagacgttatcgttacagaagtagat
tgtggtactttaagaggaactgaagttactgccttgaagaaaaatgatgagatcgttgag
aaaatttctgaaagaattttaggtagagtttctcttcataatatttatgatcctgagaca
gatgaattaatcgctgaagcagatcagatcatcaacgagcaattagctaagagaattgag
gaaacaggtttagaagctgttgaagttcgttcgccattgacttgtgaagctaagaaagga
atctgtgctaaatgttacggtagaaacttagcaactggtaaagtaattcacatgggtgaa
gctgtaggggtaattggagcacaatcaattggtgaaccaggaactcagttaacattaaga
accttccaccaagggggtactgcaggtaacgtatcagaaaacccttcaattatagctaga
agagatggtatcgttgaaatggatgaagtaagaacaattacttctgaagatgaaaacgga
aacactgctgaagttgtagtatctcgttctacagaatttagattggttgctgacaacgaa
tcaagaacacctttaatgatcgcaaacgtaccttacggttcggtattagctgtaaaacca
ggtgataaagtgaagaaaggggatgtgatctgtaagtgggatccgtataacgcggtaatc
attgcagaaacttctggtaaggtggaatacgaagatattatccaaggtatttcattccag
ctggaaattgacgaacaaacaggattcgaagagaaagtaatctctgaatctagaaataag
aaagccgtacctaccttgaaggtggtagattctaaaggggttgagcaaagagcttacaac
ttaccggtaggagcccacttaatggtaaatgatggtgaaaaaattaaggcgggtaaagtc
ttaatcaaaatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccgaga
gttactgaattattcgaagcaagaaacccttcaaacccagcggttgttacagagatcgat
ggtgtagtttcttacggaaagattaagagaggtaaccgtgaacttattgtagaggctaag
accggagaaagaaaaatttacttggtaaaactttctaatcagatcttggtacaggagaat
gacttcgtaagagctggttctccgctttctgatggttctattactccggacgatatctta
agaatcaaaggtccaactgcagttcaggaatatcttgtaaatgaaattcaggaagtttac
cgtctgcaaggggtaaaaattgatgataagcacttcgaaattatcgtaagacagatgatg
acgaaagtatctatcgttgatggaggtgatactcagttcctagaaggagctttagagcac
aaatatgatttcttagaagaaaacaacagagtatttggtcttaaagtagttgttgattct
ggtgattctaaagaattcaaaccaggtcagatgattacagcgagggaattaagagatgaa
aactctaaattgaagcgtgaagatcaaaaccttgttgaagttagagaagcacttcctgct
acagcaacgcctgtattacaagggatcacaagagctgctctacaaactaagtcattcatg
tctgcagcatcgttccaggaaacaactaaggttcttaacgaagccgcagttgctggaaaa
gtagactacttaggaggtcttaaagagaacgtaattgtaggtcacagaattcctgcaggt
accggtcttaaagagtatcagaacgttatcgtaggttctaaaaaagaattcgaagatatt
aactaa
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