Chryseobacterium piperi: CJF12_18220
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Entry
CJF12_18220 CDS
T05071
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpip
Chryseobacterium piperi
Pathway
cpip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJF12_18220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpip03019
]
CJF12_18220
03400 DNA repair and recombination proteins [BR:
cpip03400
]
CJF12_18220
Enzymes [BR:
cpip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJF12_18220
Messenger RNA biogenesis [BR:
cpip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJF12_18220
DNA repair and recombination proteins [BR:
cpip03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJF12_18220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
BrxL_ATPase
Cas3-like_C_2
DUF7022
Motif
Other DBs
NCBI-ProteinID:
ASW76013
UniProt:
A0A086B478
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All DBs
Position
complement(4144776..4146677)
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AA seq
633 aa
AA seq
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MISSNDFDQLKYKTLKHFWGYDSFRDSQEEVINSIINEKDTLVLLPTGAGKSLCYQLPAL
FREGVCLVISPLLALMKDQVNQLKFRGIEAEYLSSELDDYDAEVIYNRCKDGLTKLLYIS
PERITNKQFLQNIEEIQLSFIAVDEAHCISEWGQDFRPSYQNIKEFRKNNPEIPCLALTA
TATPKVLEEIKIKLELKNPKIFQKSFKRENIRIFTEEVSDKFQRVFDILKYNHSSGIIYV
RTRKEAELLTEFLHKNQLKNVDYFHAGLTTKEKNAKQNLWNTSNNYVLISTNAFGMGIDK
DNVRFVLHYSPAPSLENYYQEIGRAGRDGQDSFAYLLWNKQEIINFEQILKNQIPNKSEF
LKIITYLYSIFQVAEYELPEKVFQLNINGIQNFTKLSIAKIKNVLNFLHNQEIIYYNDNK
SLSSLELLMQADEIDQLPKKDGYFIEQLLRTISGITTHKVMFSEQNVSNKIGISIHLIKE
RLKELQQKRYLEYVDGALSSIKFLKPRDERVINSSYWKLFEHIQRNKIQKWEEMKFYVEN
NDYCKMKLILSYFGEKNSKNCGHCSICEKNKQTMFGKNISTHLITLLAKKPSTIEELSVQ
LNYHSKENILENLIFLLDSGKVKMLNFRTYTLA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttcttccaacgattttgaccagttaaaatataaaaccctcaaacatttttggggt
tatgatagtttcagagattcacaggaagaagttatcaattctattattaacgaaaaagat
acccttgttttacttcctacaggagcaggaaaatctttgtgctatcaactacctgcatta
ttcagagaaggagtatgccttgttatctcccctcttctggctctaatgaaggaccaggta
aatcagcttaagttcagagggatcgaagctgaatacttgtcttcagaactggacgactat
gatgcagaagtaatctacaacaggtgtaaggatggtctgaccaaattattatacatatca
ccggaaagaattaccaataaacaattccttcagaatatcgaagagatacagctttccttt
atcgctgtagatgaggcccattgtatttcagaatggggacaggatttccgtcccagctat
caaaatataaaggagttcagaaaaaacaaccctgaaatcccatgcttagctttaacagca
actgccactcctaaagttttggaagaaattaaaattaaactggaacttaaaaatccaaaa
atttttcaaaagagttttaaaagagaaaatatccggattttcactgaagaggtttcagac
aaatttcaacgtgtttttgacattttaaaatataatcatagctcaggtattatctatgta
cgaaccaggaaagaagccgagctacttaccgaatttctacataaaaaccagttaaaaaat
gtagattacttccacgccggtctgaccacaaaagaaaaaaatgcgaagcaaaatctttgg
aataccagtaataattatgtattaatttcaaccaatgctttcgggatgggaattgacaaa
gataatgttcgctttgtcctgcattattccccagctccatcattggaaaattattatcag
gaaatcggaagagccggaagagatggacaagatagctttgcttatttactatggaataaa
caggaaattatcaactttgaacaaatcctgaaaaatcaaatcccgaacaaatcagagttc
ctgaaaataatcacatacctctactctatttttcaggtagctgaatatgaactcccggaa
aaggtattccagcttaacatcaatgggattcaaaattttacaaaattatccattgccaaa
attaagaatgtattgaatttccttcataaccaggagatcatatactataatgataataaa
agcctttcttccctagaattactaatgcaagctgatgaaatagaccagctacccaaaaaa
gatggttatttcattgagcaattacttcgtactatttccggtattacaacacataaagtg
atgttcagcgaacaaaacgtaagtaataaaatcggaatcagcattcatttgataaaagag
cgccttaaggagcttcaacaaaaaagatatcttgaatatgtagatggagctttgtcaagc
atcaaatttttaaagccaagagatgaacgggttatcaattcatcttattggaaactcttt
gaacacatacaaagaaataaaattcagaaatgggaggaaatgaaattttatgtagaaaat
aatgactattgtaaaatgaagcttattctctcttattttggcgaaaagaactcaaaaaat
tgtggacactgttctatctgtgaaaaaaataaacagaccatgtttgggaaaaatatttcg
acacacctgatcactttgcttgccaaaaagccatctaccattgaggagctttcagtgcaa
ctgaactatcattcaaaagaaaatatattagagaatcttatttttcttttagattcagga
aaggtaaaaatgctcaatttcagaacatatacattggcttaa
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