Comamonas piscis: HS961_13190
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Entry
HS961_13190 CDS
T11249
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpis Comamonas piscis
Brite
KEGG Orthology (KO) [BR:
cpis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpis03019
]
HS961_13190 (hrpA)
Enzymes [BR:
cpis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HS961_13190 (hrpA)
Messenger RNA biogenesis [BR:
cpis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HS961_13190 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_23
WHD_HA2
NACHT
AAA_19
nSTAND3
T2SSE
AAA_25
nSTAND_NTPase5
SLFN-g3_helicase
SRP54
AAA_30
PhoH
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
QMV73702
UniProt:
A0A7G5EI77
LinkDB
All DBs
Position
2925626..2929687
Genome browser
AA seq
1353 aa
AA seq
DB search
MSLKITFPESLPVSARRDEIMEAMDRHQVIIVCGETGSGKTTQLPKIALALGRGKANATP
NEKGEVRGHLIGHTQPRRIAASSVAKRIAEELQTPLGDVVGYKVRFQDRLSKDASVKLMT
DGILLAETQTDPLLKQYDTLIIDEAHERSLNIDFLLGYLRQLLPKRPDLKVVVTSATIDA
DRFARHFAGPEGPAPVIMVSGRTFPVEMRYRPFEDAKDYDLNDAIADGVDELWSGAAGGD
ILIFLPGEREIREAADHLRKHLQHSPVLRNAEVLPLFSRLSQAEQDRIFEGHTGRRIVLA
TNVAETSLTVPGIRYVIDTGTARVKRYSFRSKVEQLLVEPVSQAAANQRAGRCGRVANGI
CIRLYDEADFQSRSPFTDPEILRSSLAGVILRMKSLHLGDVVNFPFLEAPSGRAIADGYQ
LLAELGAVDEQGVLLPMGQALSRLPLDPRVARMIVEARERGALAEVLVIASALSVQNVRD
RPLEAQQQADQQHAKFDDEKSEFSGYLRLWKWLQDARGGKVVAKTRKDMALQSAPAKGLA
TGRNASFLPVAQRSTGATAAIDTAAPLAAFTPQDSVVDDASHKLSNRQWEQLLRQNFINI
RRVREWRDIHSQLLTVVKEQRWPMNVEPAGYEAVHLSMLSGLLGNIGFKTEEGEGYLGAR
GIRFHPHPGAHLSKKPGRWIVAAELVETSRLYGRGIAAIEPQWLEQVGAHLLRKQLLDPH
WEKKQGEVAAYERATLYGLVVYSQRRISYGKIDPQGARDIFIRQALVEGDWETRLPFLQA
NQKLIAKVEELEHKSRRQDVLVDDALIYAFYDQQIPQDICTGRALERWVKDESAHNPDLL
RLSRDELMRHEAAGITTAAFPKIIKMGGVDCTATYLHQPGDPRDGVTVNVPLFVLNQVSE
ERAEWLVPGMLKDKIQALLKSLPQRPRSRFVPLAENAQRLTELLGSAERFGAGSLVEALL
KQTRDETSLDIKRADFKLDMLSPHLFMNFRITDEHGRQLGQGRNLGALKAQWGAKARGAF
QALAGLKLAPELEAFETPAPQATAPSKASGKAAAAGSPAAPSKSKTPAHAADQRWTDWGF
GALPELMEIKQGNQTLIGFPALIDHGTGVGIEVFDEPEVAASRHALGLRRLFALQIRDAL
KYLEKNIPDLQKMAVGYMPLGTQEELREQIINVAIDRAFLQDPLPADAEQFKQRVQDGRG
RLTLIANEVARMASSVLQEYMAAVRKIKDTKNAPEATADAQQQLQKLVPKNFIAIAPWAQ
LGHYARYLKAITARLDKYRADPARDATKLKELQPLEQRYWRLVAERKGQVDARMQEYRWM
LEELRVSFFAQELRTPYPVSSKRLDKVWQQLQQ
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcaagattacgtttcccgaatccctgccagtttccgcccgccgtgatgaaatc
atggaggccatggaccgccaccaggtcatcatcgtctgcggcgagaccggatcgggcaaa
accacccagctgcccaagattgcgttggccctgggccggggcaaggccaatgccaccccg
aatgaaaaaggcgaggtgcgcggccacctgatcggccacacgcagccccgccggattgca
gccagcagcgtagccaaacgcattgccgaagagctgcagacgccgctgggcgatgtagtg
ggctacaaggtgcgttttcaggatcggctgtccaaggacgcctccgtcaagctgatgacc
gacggtatcttgctggccgagacgcagaccgacccgctgctcaagcagtacgacacgctg
atcattgacgaggcccatgagcgcagcctcaatatcgactttttgctgggctacctgcgc
cagctgctgcccaagcggccggatctgaaggtggtggtcacctcggccaccattgatgcc
gaccgctttgccaggcactttgccggccccgaaggcccggccccggtgatcatggtttcg
ggccgcactttcccggtggagatgcgctaccgcccgtttgaagacgccaaggactacgac
ctcaacgatgcgattgccgatggcgttgatgagctgtggtcgggcgccgctggcggcgac
attctgatttttctgccgggcgagcgtgagatccgcgaggcggccgaccatctgcgcaag
cacctgcagcattcgccggtgctgcgcaatgccgaggtgctgcccttgttctcgcgcctg
tcgcaggccgagcaggaccgcatctttgaaggccataccggccggcgcattgtgctggcc
accaatgtggccgagacctcgctcacggtgccgggcatccgctatgtgatcgataccggc
acggcccgggtcaagcgctattccttccgcagcaaggtcgagcagttgctggtcgagccg
gtcagccaggcagcggccaaccagcgtgctggccgctgcggccgcgtggccaacggcatc
tgcattcgcctctatgacgaggccgatttccagtcgcgcagcccctttaccgatccagaa
atcctgcgctcgtccttggccggcgtcatcctgcgcatgaagtcgctgcacctgggcgat
gtggtgaacttcccgtttctggaagcgccctctggccgcgccattgccgatggctaccag
ctcttggcggagctgggtgcggtggatgagcagggcgttttgttgccaatgggccaggcc
ttgtcacgcctgccgctcgatccgcgtgtggcgcgcatgattgttgaggcccgcgagcgc
ggcgcactggccgaggtgctggtgattgcctcggcgctgagcgtgcagaatgtgcgcgac
cggccgctggaagcccagcagcaggccgaccagcagcatgccaagtttgacgacgagaag
agcgagttcagcggctacctgcggttgtggaaatggctgcaggatgcgcgcggtggcaag
gtggtggcgaagacccgcaaggacatggccttgcagtcggcgcccgccaagggcttggcg
accggccgcaatgcctcctttttgccggtggcccagcgcagcaccggtgccaccgcggcc
attgataccgccgcgccgctggccgcctttacgccgcaggacagcgtggtggacgatgcc
agccacaagctgagcaaccgccagtgggagcagctgctgcgccagaactttatcaatatc
cgccgggtgcgcgagtggcgcgatatccattcgcagctgctgacggtggtgaaggagcag
cgctggccaatgaatgtggagcccgccggctatgaggcggtacacctgtccatgctctcg
ggcctgctgggcaatatcggcttcaagaccgaggagggcgagggctacctgggtgcgcgc
ggcatccgtttccatccgcaccccggcgcgcatttgtccaaaaaacccggccgctggatt
gtggcggccgagctggtcgagacctcacgcctttacggccggggcattgccgccattgag
ccgcagtggctggagcaagtgggcgcgcatctgctgcgcaagcaattgctcgatccgcac
tgggagaaaaagcagggcgaggtagcggcttacgagcgcgccaccttgtatggcctggtg
gtctacagccagcgccgcatcagctacggcaagatcgacccgcagggcgcgcgcgatatc
tttatccgccaggcgctggtcgagggcgactgggagacgcgtctgccatttttgcaggcc
aaccagaagctgattgccaaggtcgaggagctggagcacaaaagccgccgccaggacgtg
ctggtggacgatgcgctgatctatgcgttctacgaccagcagattccgcaagacatttgc
accggccgggcgctggagcgctgggtcaaggacgagagcgcgcacaaccccgatctgctg
cgcctgtcgcgcgacgagttgatgcgccatgaggcggctggcatcaccacggcggcgttc
cccaaaatcatcaagatgggcggcgtggattgcacggccacctatttgcaccagcccggt
gacccgcgcgatggcgtgaccgtgaatgtgccgctgtttgtgctcaaccaggtgagcgag
gagcgcgccgaatggctggtgccgggcatgctcaaggacaagatccaggccttgctcaaa
agcctgccccagcgcccgcgcagccgctttgtgccgctggccgagaatgcccagcgcctg
accgagctgctgggcagtgccgagcgctttggcgccggcagcctggtggaggcgctgctc
aagcagacgcgcgatgagacctcgctggacatcaagcgggccgacttcaagctcgacatg
ctcagcccgcacctgttcatgaacttccgcatcaccgacgagcatggccgccagctgggc
cagggccgcaacctgggtgccttgaaggcccagtggggcgcgaaggcgcggggcgccttc
caggcgctggcggggctgaaactggcgccggagttagaggcctttgagacgccagcaccg
caggccaccgcgcccagcaaggccagcggcaaggcagcagcagccggcagccctgcagcc
ccgagcaaaagcaaaacccccgcccatgcggccgaccagcgctggaccgattggggcttt
ggcgccttgcccgagctgatggagatcaagcaaggcaaccagaccttgatcggttttccg
gcgttgatcgaccatggcacgggggtggggatcgaggtgtttgacgagcccgaggtggca
gcgagccgccacgcgctgggcctgcggcgcctgtttgcgctgcagatccgcgatgcgctc
aagtacctggaaaagaacattcccgatctgcagaagatggcggtgggctatatgccgctg
ggcacacaggaagagctgcgcgagcagatcatcaatgtggcgattgaccgggcttttctg
caagacccgctgcccgccgatgctgagcagttcaagcagcgggtgcaggacgggcgcggg
cgcctgaccttgatcgccaacgaggttgcgcgcatggccagcagcgtgctgcaggagtac
atggcggccgtgcgcaagatcaaggacaccaagaatgcgccggaggcaacggccgatgcc
cagcagcagctgcaaaaactggtgcccaagaactttatcgccatcgcgccctgggcccag
ctgggccactatgcgcgctatttgaaggcgatcaccgcgcgcctcgacaagtaccgggcc
gaccccgcgcgcgatgccaccaagctcaaagagctgcagccgctggagcagcgctactgg
cgcctggtcgcagagcgcaaaggccaggtcgatgcgcgcatgcaggagtaccgctggatg
ctggaagagctaagggtgagctttttcgcgcaggaactgcgcacgccttacccggtcagc
agcaagcggctggataaggtttggcagcagcttcaacagtaa
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