Comamonas piscis: HS961_18125
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Entry
HS961_18125 CDS
T11249
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpis Comamonas piscis
Pathway
cpis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HS961_18125 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpis03019
]
HS961_18125 (pnp)
03016 Transfer RNA biogenesis [BR:
cpis03016
]
HS961_18125 (pnp)
Enzymes [BR:
cpis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HS961_18125 (pnp)
Messenger RNA biogenesis [BR:
cpis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HS961_18125 (pnp)
Transfer RNA biogenesis [BR:
cpis03016
]
Prokaryotic type
tRNA degradation factors
HS961_18125 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
KH-I_KHDC4-BBP
KH_SLS1_2
DUF5813
Motif
Other DBs
NCBI-ProteinID:
QMV74596
UniProt:
A0A7G5EKS1
LinkDB
All DBs
Position
complement(4029883..4032129)
Genome browser
AA seq
748 aa
AA seq
DB search
MSIFNKVTKTFQWGQHTVTMETGEIARQASGAVLVNIDDTVVLATVVGSKIAKTGQDFFP
LTVDYIEKTYAAGKIPGSFFKREAKPSEHETLTSRLIDRPIRPLFPEGFFNDVHVVIHTI
SLNPEVDADIAALIAVSAALSISGIPFNGPIGAARVGYINGEYVLNPGQTQRKDSLMDLV
VAGTEAAVLMVESEAQQLPEEVMLGAVVYGHEQSQVAINVIHELVREAGKPTWDWAAPAK
DEALIAKVGELGDVALRDAYQLRNKQARTLACRQAYAAVKAGLNEQGVAFDGVKVDGMLF
DIEAGIVRSQILAGEPRIDGRDTRTVRPIEIRSSLLPRTHGSALFTRGETQALVISTLGT
ERDAQRIDALSGEFEDRFLFHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAACLPSK
EEFPYTIRVVSEITESNGSSSMASVCGGCLSMMDAGVPMKAHVAGIAMGLIKDGNKFAVL
TDILGDEDHLGDMDFKVAGTTNGITALQMDIKIQGITKEIMQVALAQAKEARMHILGKMQ
EAMGEAKAEVSSFAPKLYTMKINPEKIRDVIGKGGSTIRALTEETGTQINIEEDGTITIA
ATDAAKADEAKRRIEEITAEVEIGKIYEGPIVKILEFGALVNLLPGKDGLLHISQIAHER
VEKVTDYLTEGQVIKVKVLETDEKGRVKLSMKALLDRPAGMPEREPREPRGDRGDRGDRG
DRAPRQHREPREPRVEGDNNDQQQQQQQ
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtccatattcaacaaagtcaccaagactttccagtggggccagcacacggtcaccatg
gaaacgggtgaaatcgcgcgccaagcttcgggcgcggtgctggtcaacattgacgatacc
gtcgtgctggccacggtggtgggctccaagatcgccaagaccggtcaggacttttttccg
ctgaccgttgattacattgagaagacctacgccgcaggcaagatccccggcagcttcttc
aagcgcgaagccaagcccagcgaacacgaaaccctgaccagccgcctgatcgaccgtccg
atccgcccgctgttccccgaaggtttcttcaacgacgtgcatgtggtcatccacaccatc
tcgctgaacccagaagtggatgccgacatcgctgcgttgatcgccgtgtccgctgcactg
tcgatctcgggcattcctttcaatggccctatcggtgctgcccgcgtgggttacatcaat
ggcgaatacgtgctcaaccccggccagacccagcgcaaggattcgctgatggacctggtg
gtggcgggcaccgaagccgctgtgctgatggtcgagtccgaagcacagcaactgcctgaa
gaagtgatgctgggcgccgtggtctatggccatgagcaaagccaagtggcgatcaacgtg
atccatgagctggtgcgcgaagccggcaagcccacctgggactgggccgctcctgccaag
gatgaagccctgatcgccaaggtcggcgagctgggcgatgtcgccctgcgcgacgcttac
cagctgcgcaacaagcaagcccgtacgctggcttgccgccaggcttatgccgctgtgaag
gctggcctgaatgagcaaggcgtggcctttgacggcgtcaaggtcgatggcatgctgttc
gacatcgaagctggcatcgtgcgctcgcagattctggctggtgagccccgtatcgatggc
cgtgacacccgcaccgtgcgtcctatcgagatccgctcgtccctgctgccacgcacccac
ggctcggccctgttcacccgtggtgaaacccaggcgctggtgatctccaccctgggcacc
gagcgcgatgcccagcgtatcgacgccctgtctggcgagtttgaagaccgcttcctgttc
cactacaacatgcctccctttgccaccggcgaagtgggtcgcatgggttcgaccaagcgc
cgcgaaatcggccacggccgtctggccaagcgcgctctggccgcttgcctgccgtcgaag
gaagagttcccctacaccatccgcgtggtgtcggagatcaccgaatcgaacggttcctcg
tcgatggcttcggtctgcggcggctgcctgtcgatgatggacgccggtgtgccgatgaag
gcccacgtggctggtattgccatgggtctgatcaaggacggcaacaagtttgctgtgctg
accgacatcctgggtgacgaagatcatctgggtgacatggacttcaaggtagccggtacc
accaacggtatcaccgcgctgcagatggacatcaagatccaaggtatcaccaaggaaatc
atgcaagtggcactggcacaagccaaggaagcgcgcatgcacatcctgggcaagatgcaa
gaagccatgggcgaagccaaggccgaggtctcgtcgtttgcgcccaagctgtacacgatg
aagatcaaccccgagaagatccgtgatgtgatcggtaagggcggctccaccatccgtgcg
ctgaccgaagagaccggcacccagatcaacatcgaggaagatggcaccatcaccatcgcc
gcgaccgacgctgccaaggctgacgaagccaagcgccgcatcgaagagatcaccgccgaa
gtcgaaatcggcaagatctacgaaggcccgatcgtcaagattctggaattcggtgcactg
gtgaacctgctgcccggcaaggatggtctgctgcacatcagccagatcgctcacgagcgc
gtggaaaaggtgaccgactatctgaccgaaggccaggtcatcaaggtcaaggtgctggag
acggacgaaaagggccgtgtcaagctgtcgatgaaggcactgctggaccgcccagcaggc
atgccagagcgtgagccacgtgaaccccgtggtgatcgtggcgaccgcggtgaccgtggt
gatcgcgctccgcgccagcaccgcgaaccccgcgagccgcgcgttgaaggcgacaacaac
gaccagcagcagcaacaacagcaataa
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