Comamonas piscis: HS961_21790
Help
Entry
HS961_21790 CDS
T11249
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cpis Comamonas piscis
Brite
KEGG Orthology (KO) [BR:
cpis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpis03016
]
HS961_21790
Enzymes [BR:
cpis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HS961_21790
Transfer RNA biogenesis [BR:
cpis03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
HS961_21790
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Myosin_N
SH3_VIII-1_N
Motif
Other DBs
NCBI-ProteinID:
QMV75268
UniProt:
A0A7G5EMP3
LinkDB
All DBs
Position
4822954..4825020
Genome browser
AA seq
688 aa
AA seq
DB search
MYALFDDAGKFLAGRILSEAESSAQIELDSGKRVKVKAANLLLKFDKPAPAELIAQAQAL
SVEIDPQLAWEFAPEQEFGFADLARDYFSENASITEQVAALFKLFEAPHYFRRAGKGRFK
KAPEEIVQQALAAIEKKAQLQAQIDAWAVELANGQCPAPVQQQLYKILFRPDKNAPEYKA
VVEASRKAQLAPLALLQKAGAIDSSYQFHWQRFLFDNFPKGTGFPAVTAPLPPSDLPLAT
VEAYSIDDSATTEIDDALSVQGLGTGQVIVGVHIAAPGLAIEPGSALDHLGRSRYSTVYM
PGYKVTMLPDEVVQIYTLDEGRANPAVSLYVTYDEATLEVLNKETRLERVPVVSNFRYDK
LDHIATEAWLTDPSLQVEDTPQPLLDKRDELTFLYRLSRHLKAGREVVRGKPENFNRPDY
NFRLQGNGDQVPNGTETVQITVRKRGAPLDLIVAEAAIVANSSWGQLLADHGVPGIYRSQ
ASLAPGIKVRMSTKALPHAGIGVKSYVWATSPLRRYTDLANQWQIIACARHGATAALVAP
FKPKDAELFSIISGFDAAYSAYNGYQAGMERYWTLKYLMQNNISDLTATVMKEGPAGSML
VRADALPLVFPVLGAQNLPRGAQVRVKLGEIDEITLDVTGTVLERLDDAQANQAETESPE
DEEEAVAGPIAIAVDMSDGEDAAAIKTD
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtatgcactgtttgacgacgctggcaagtttctcgccggccgtatcctctccgaagct
gaaagttccgcgcaaattgaattggactccgggaaacgggtcaaggtcaaagcagcgaac
ctgctcctcaaatttgacaagccggcgcccgctgagctgatcgcacaggcgcaagcgctg
tccgtagagatagatccccagctggcctgggagtttgcgcctgagcaggaatttggcttt
gccgacctggcgcgcgactacttctcggagaacgcctcgatcaccgagcaggtggcggcg
ctgttcaaactgtttgaagcaccgcactacttccgccgtgcgggcaagggtcgcttcaag
aaggcgcctgaagagatcgtgcagcaggcgctggccgccatcgagaaaaaggcccagctc
caggcgcagatcgatgcctgggcggtcgagctggccaacggccagtgcccggcccctgtg
caacagcagctctacaagattctgttccgccccgacaagaacgcgcccgaatacaaggcc
gtcgtcgaagccagccgcaaggcgcagctggcgccgctggcactgctgcaaaaggcaggc
gccatcgactcgtcctaccagttccactggcagcgctttttgtttgacaacttccccaag
ggcacgggcttcccagccgtcaccgcgccactgccgcctagtgatctgccactggccacg
gtggaggcctactccatcgacgattcggccacgaccgaaatcgacgatgcgctgtcggtg
caaggtctgggcacgggccaggtcatcgtcggtgtacacattgccgcccccggcctggcc
atcgagcccggctcggcactcgaccatctgggtcgcagccgctattccaccgtctacatg
ccgggctacaaggtcacgatgctgcccgacgaagtcgtgcagatctacaccttggacgaa
ggccgcgccaacccggccgtgtcgctctacgtcacctacgacgaagccaccctggaagtg
ctgaacaaggaaacccgcctggaacgcgtgcccgtggtcagcaacttccgctacgacaag
ctcgaccatatcgccaccgaagcctggctgactgatcccagcctgcaggtcgaggacacg
ccccaaccactgctggacaagcgcgacgagctgaccttcctctaccgcctctcgcgccac
ctcaaggcgggccgcgaagtggtgcgtggcaagcccgagaacttcaaccgcccggactac
aacttccgcctgcaaggcaatggcgaccaggtgcccaatggcacggagaccgtgcagatc
accgtgcgcaagaggggcgcgccgctggacctgatcgtggctgaagcggccatcgttgcc
aacagcagctggggccagctgctggccgaccatggtgtgcccggcatctaccgcagccag
gccagcctggcgcccggcatcaaggtgcgcatgtccaccaaggcgctgccgcatgcgggc
attggcgtcaaaagctatgtctgggccacgtcgccgctgcgccgctataccgacctggcc
aaccaatggcagatcattgcctgcgcgcgccatggcgccaccgcagcgctggtcgccccg
ttcaagcccaaggatgcggagctgttctccatcatcagcggctttgatgcggcttacagc
gcctacaacggctaccaggctggcatggagcgctactggaccctgaagtacctgatgcaa
aacaacatcagtgacctcactgcaacagttatgaaggaaggcccggcaggcagcatgttg
gtgcgtgcagatgcactaccattggtgtttccggtactgggcgcgcagaatctgccgcgt
ggtgcccaagtccgggtcaagctcggcgagatcgatgagatcacgctggatgtgaccgga
accgtgctggagagactggacgacgcgcaggccaaccaggccgagacagagtcgccagag
gacgaggaggaggctgtagctgggcccatcgccatcgcggtggacatgagcgacggtgag
gacgcggcggccataaaaaccgattaa
DBGET
integrated database retrieval system
