Chlamydia pneumoniae J138: vacB
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Entry
vacB CDS
T00032
Symbol
vacB
Name
(GenBank) ribonuclease family
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cpj
Chlamydia pneumoniae J138
Pathway
cpj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
vacB (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpj03019
]
vacB (vacB)
03016 Transfer RNA biogenesis [BR:
cpj03016
]
vacB (vacB)
Enzymes [BR:
cpj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
vacB (vacB)
Messenger RNA biogenesis [BR:
cpj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
vacB (vacB)
Transfer RNA biogenesis [BR:
cpj03016
]
Prokaryotic type
tRNA degradation factors
vacB (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BAA98710
UniProt:
Q9Z848
LinkDB
All DBs
Position
585807..587837
Genome browser
AA seq
676 aa
AA seq
DB search
MLKKPKRKPGRRTYGKSLKIFIPGTLFVHARKGFGFVSPDNPEEYPFDIFVPARDLRGAL
DGDHVIVSVLPYPRDGQKLKGTISEVLARGKTTLVGTITSLVSPTSALAYTSMSGSQSLI
PVELLPGRTYKIGDRILLSTPPWVDKPQEGASPALQMLEFIGHITNAKADFQAIQAEYNL
AEEFPPEVIEEASLFSQKHITQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNY
ILGVHIADVSHYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAV
SVFMTFTKSGHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLSKILNEMATLSKKFS
DIREERGCIRFVLPSVTMSLDNLQEPVALIENHQTFSHKLIEEFMLKANEVVAYHISHQG
VSLPFRSHEPPNDENLLAFQELAKNMGFDITFTPTQEPDYQYLLQTTSAGHPLEQVLHSQ
FVRSMKTASYSTENKGHYGLKLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHLEIIVR
ACSTKERVSAKAENSFENLKKTRFINKFLQEQPKTTYHAYIITANHEGLSFVVTEFCHEG
FIAAAELPKEYSLKKNALPESIPDKMKPGASIKVTIDSVNLLTQKIVWSIATTTEDKPKK
IKKTPSKKKGTKKRAS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
ttgttgaaaaaaccaaaaagaaaaccagggagaagaacatacggtaaatccttgaagatt
tttattccaggaaccctatttgttcatgctagaaaaggtttcggttttgtttctcccgac
aaccccgaagaatacccatttgatatttttgttcccgcccgagatttacgcggggctcta
gatggtgaccacgtgattgtctccgtgcttccctatccaagagacggacaaaaactcaaa
ggcactatcagcgaagtactcgcaagaggaaaaacaacactcgtaggaacgatcacctca
ctagtcagtcccacatcagcacttgcctacacaagcatgtcgggatcccaatctttaatt
ccagtagaactccttcccggacgcacttacaaaatcggcgatcgcattcttctgagcact
cctccctgggtagataaaccccaagaaggagcctctccagccttacaaatgctcgaattt
attggccacatcaccaacgctaaagcggactttcaggcaattcaagccgaatataacctt
gccgaagaattccccccagaggtcattgaagaagcaagccttttctctcaaaaacacatt
acccaagttctccactctcgcaaagatctccgtgatctcctctgtttcaccatagactct
tccacagccagagacttcgacgatgccatctccctcacctacgatcataataacaattac
attcttggtgtacacatcgcagacgtctcccactacgttaccccacattctcacctagac
aaagaagctgctaaacgctgtaactctacatatttcccagggaaagtcattcccatgttg
ccatcagcactctctgataatctctgcagcttaaaaccaaacgttgatagactcgctgta
tccgtatttatgacgtttacaaaatcaggtcatctttcagattaccagattttccgtagc
gtcattcgaagcaaatatcgtatgacctacgatgaagtcgataacatcattgaaaagaaa
cactcccaccccctctcaaaaatcctcaatgagatggccactctaagtaaaaagttttcc
gatatccgtgaagaacgtggttgcattcgctttgtcctcccctcagtcactatgtccttg
gataatcttcaagaacccgtagctctgatagaaaaccaccagaccttctcccataaactc
atcgaagagtttatgcttaaagcaaacgaagtggtcgcctatcatatctcccatcaaggc
gtttctctaccttttcgtagtcacgaacctcccaatgatgaaaacctactcgccttccaa
gaattggcaaaaaacatgggctttgatatcacgttcactcccacacaagaacctgattac
caataccttttgcaaactacgtcagcaggacatcccctagagcaagttctacactcgcag
tttgtccgaagtatgaaaacagcctcctactctacagaaaataaaggtcattacggactt
aagctcgactactacacccactttacgagtcccatacgtagatatatcgatcttattgtt
cacaggcttctcttcaaccccctatctatagaccaaacgcacctcgaaattatcgtaaga
gcatgctctacaaaagaacgagtatccgcaaaagcagaaaattctttcgaaaacctcaaa
aaaactcggttcataaataaatttttgcaagagcaacctaaaactacataccatgcgtat
atcatcactgcaaatcatgaaggactctcatttgtagtgaccgaattctgccatgaaggg
ttcattgcagcagcagaactccctaaagaatattccctaaagaaaaacgctcttccagaa
tctatcccagataaaatgaaacctggagcttctataaaagtcactattgattccgtgaat
ctccttacgcaaaaaatcgtctggtctatagcgacaaccacagaagataaacctaagaaa
ataaagaaaacgccttctaagaaaaaaggaacgaaaaaaagagcctcgtaa
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