Corynebacterium pseudotuberculosis 1002: CP1002_07955
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Entry
CP1002_07955 CDS
T01876
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
cpk
Corynebacterium pseudotuberculosis 1002
Brite
KEGG Orthology (KO) [BR:
cpk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpk03019
]
CP1002_07955
Enzymes [BR:
cpk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CP1002_07955
Messenger RNA biogenesis [BR:
cpk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CP1002_07955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
SH3_HelY
ResIII
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
AAA_22
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADL20913
LinkDB
All DBs
Position
1730908..1733664
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AA seq
918 aa
AA seq
DB search
MTITPAPHSHLLEFISRQKFPLDDFQLQGCQAVEDDRGVLVCAPTGAGKTIVGEFAVSLA
LSRGTKCFYTTPIKALSNQKFHDLVEVHGAEAVGLLTGDVSINHDADVLVMTSEVLRNMI
YARSEALTRLTHVVMDEIHFLSDKSRGAVWEEAILGLDESVKVVGLSATVSNSEEFGRWL
ETVRGDTEVIVSEHRPVPLNQWMMVGRRIHPLFEPDSGGEVNVRLEEHIDRIEGKEAIDR
GRDQFKSGGFRARSSGKSHSSRPNRPQQDRYRPQGRPEVLDVLQSQDMLPAITFIFSRAG
CEGALYQCMRSSIVLTDQQEAEEIARIVDAGVAGIPEEDLKVLDFRKWRAALMRGFAAHH
AGMLPAFRHIVEELFTKGLVRAVFATETLALGINMPARTVVLEKLVKYNGEAHVDLTPGQ
YTQLTGRAGRRGIDIIGNAVVQWAPAMDPRSVAGLASTRTYPLISTFSPGYNMSVNLLKT
IGFTSAHRLLEKSFAQFQADGSVVDLVRKIERSETRVKDLESQLSSHISEENIEKFLEYI
TLRRELTDEERRAKRHSFEQREMEVTKVLASLNLGDVIAMPGKKRPLLAVVVQPSNNSSD
PKPWVTMESGWSGRVDTAAFPMPPVVVGHMKLSRATIAQPRKNSKYVVRQFEKLTYSRPK
RLKPQHRNRPTEKITALRARIRSHPAHQWDNREDLARIGEKLARAQKETSQLRTTVETAT
DTLGKTFDRILGLLGELDYVEFIDAIPRVTEEGENLAKIHNESDLLVAQCLKRGIWDDLD
PAELAGVVSMCTFENRKETRGEPEAATESMALAMNNTLRLWDELSVNERRYQLPVTKYPE
AGFSLAMHQWTAGAPLGYCLAAAAESGAELTAGDFVRQCRQVIDLLEQIRSTAYNKETRK
SARSAIEAIRRGVVAIGN
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgacgattacgccagcccctcattctcatctcctagagttcatctctcggcagaagttt
ccccttgatgatttccagcttcaaggatgccaagccgttgaagatgaccgtggagtttta
gtatgcgcgcctacgggggcaggcaaaactatagtcggggaatttgccgtctctttggcc
ctttcccgtggtactaagtgtttttacaccacgccaatcaaagcgcttagtaatcagaaa
tttcatgacttggttgaagttcatggcgcagaagccgttggcttgctcactggcgacgtt
tctatcaatcatgatgcagatgtccttgtgatgacctctgaagttctccgaaatatgatc
tatgcccgatcagaggctttaacccggcttacccacgtagtcatggatgaaatccatttc
ctgtctgataagtcccgcggtgcagtatgggaagaggcaattcttggtcttgatgaatct
gtcaaggtagtcggtttatctgccaccgtcagcaactcagaagaattcggtcgctggctg
gaaacggtacgaggagacaccgaggttatcgtttctgagcacaggccagttccgctgaat
cagtggatgatggtgggacgccgtattcatccgttgtttgaaccggattcaggcggtgaa
gtgaatgttcgactcgaggagcacatcgaccgcatagaggggaaagaagcaattgatcga
ggacgcgaccagttcaagtccggaggcttccgtgctcgctcatccggaaagtctcatagc
tcacgtccaaatcgcccacaacaagatcggtaccgcccacaaggacgaccagaggttctc
gatgttttgcaaagtcaagacatgcttccggcaatcactttcatattttcccgtgctgga
tgcgaaggcgcgctatatcaatgcatgcgctccagcatcgtgctcacggaccaacaagaa
gcagaagaaatcgcccgtatcgttgatgctggggtagcggggattcccgaggaagacctc
aaggttcttgatttccgcaagtggcgggctgcgttgatgcgtggtttcgccgctcaccat
gctggaatgctgccggcttttaggcacatcgttgaagagctttttactaaaggtctcgtc
cgcgctgtttttgccacggaaaccctcgcactcggcattaatatgcctgctcgtaccgtg
gttctagaaaaactggtcaaatacaatggtgaggcacacgtagacctcacgcctggtcaa
tatacacagctaacgggtcgtgcaggccgtcgtggcattgatattatcggaaatgctgta
gtccaatgggctcccgcaatggatcctcgctctgtcgctgggctcgcgtccactcgaaca
tatccacttatctcaaccttttcacccggctacaacatgtcggttaatttacttaaaacc
attggttttacctcggcgcaccgacttttggaaaaatctttcgctcaattccaagcagat
ggaagcgtagtagacctcgtgcggaaaatagagcgctcggaaacgcgcgttaaagatctt
gaatcgcagctcagcagtcatatatctgaagagaatattgagaaatttttagaatatatc
acgctcagacgcgagcttacagatgaagaacgtagagcaaaaaggcactcatttgaacag
cgggagatggaagttaccaaggtgttggccagccttaatctcggagacgtgattgctatg
ccaggcaaaaaacgcccgctattagccgtagttgtacaaccctctaataattcttctgac
cctaaaccttgggtgaccatggaatctggctggtcaggaagagttgatactgccgctttc
ccgatgcctccagtggtagtaggtcatatgaagctctctcgtgccacgattgctcaacct
cggaaaaactccaagtatgtggtcagacaatttgaaaaactcacgtattcccgcccaaag
cgtctcaagcctcagcaccgtaatcggcctacagaaaaaatcactgcacttcgcgctcgc
atacgctcccacccagcccaccagtgggataatagggaagacctcgcaaggataggagaa
aagctcgcacgtgcacagaaagagacatctcaattacgtactacggtagagacagccacc
gataccctgggaaaaacttttgatcggattctagggctgctaggagaacttgattatgtc
gagtttattgatgccatcccacgggtaacggaagaaggcgaaaacctagcgaaaattcac
aacgaatcggacttgttagtagctcaatgcctcaaacgtggaatctgggatgacctcgac
cccgcagaacttgctggtgttgttagtatgtgcacatttgaaaatcgtaaagaaacacgt
ggtgaaccagaggctgcgacagagtctatggccttggccatgaacaatacgctgaggctc
tgggatgagctcagtgtgaatgaacggcgctaccaattgcctgtaaccaagtacccagaa
gccggtttttctctagctatgcatcaatggactgctggtgcgcctcttggttattgtctc
gccgctgcagccgaatcaggcgccgagctcaccgcaggagattttgtgcgacaatgccgc
caagttatcgatttactcgaacagatcaggtcaactgcttataacaaagaaacaagaaag
tcagctcgatctgccattgaagcaatacgacgcggtgtggtcgccatcggcaactag
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